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Showing :
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2
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2
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1.5k
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Answer:
Answer: Read block operation failed with BAM file
7 months ago by
John Marshall
3.0k
0
votes
0
replies
548
views
Answer:
Answer: bcftools view -r issue
7 months ago by
John Marshall
3.0k
2
votes
1
reply
1.9k
views
Answer:
Answer: Using Bioconda with Mac M1 Processor?
9 months ago by
John Marshall
3.0k
3
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0
replies
130k
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Answer:
Answer: from .BAM to .BAI using samtools
10 months ago by
John Marshall
3.0k
3
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1
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1.3k
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Answer:
Answer: samtools install error
11 months ago by
John Marshall
3.0k
1
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0
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16k
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Answer:
Answer: How to efficiently remove a list of reads from BAM file?
21 months ago by
John Marshall
3.0k
3
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3
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2.6k
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Answer:
Answer: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
21 months ago by
John Marshall
3.0k
4
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2
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2.6k
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Answer:
Answer: bwa 0.7.18 download to fix compile fail with GCC 10
7 days ago by
John Marshall
3.0k
4
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1
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3.0k
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Answer:
Answer: Is there equivalent of bgzip in Python?
2.1 years ago by
John Marshall
3.0k
4
votes
2
replies
3.3k
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Answer:
Answer: Why piping a conda command into bash doesn't work ?
2.1 years ago by
John Marshall
3.0k
4
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0
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1.2k
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Answer:
Answer: Convert SAM to BAM error
2.2 years ago by
John Marshall
3.0k
3
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1
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922
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Answer:
Answer: Determine fragment alignment overlaps by parsing CIGAR string in the MC tag
2.3 years ago by
John Marshall
3.0k
3
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0
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4.3k
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Answer:
Answer: building bcftools: curl/curl.h: No such file or directory
2.6 years ago by
John Marshall
3.0k
3
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1
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1.4k
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Answer:
Answer: WHAT IS NA12878?
2.6 years ago by
John Marshall
3.0k
0
votes
2
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2.1k
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Answer:
Answer: Exec format error in unmapped bam file
2.6 years ago by
John Marshall
3.0k
0
votes
0
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2.2k
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Answer:
Answer: Fasta.fai file error
2.6 years ago by
John Marshall
3.0k
1
vote
1
reply
1.7k
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Answer:
Answer: samtools returns error - cigar and query sequence are of different length even t
2.7 years ago by
John Marshall
3.0k
6
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2
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34k
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Answer:
Answer: bcftools: error while loading shared libraries: libcrypto.so.1.0.0: cannot open
2.8 years ago by
John Marshall
3.0k
6
votes
0
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1.9k
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Answer:
Answer: bcftools vcf2sex
3.1 years ago by
John Marshall
3.0k
5
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1
reply
3.2k
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Answer:
A: bcftools +fill-tag does not work in loop
3.1 years ago by
John Marshall
3.0k
1
vote
1
reply
1.4k
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Answer:
A: Samtools Faidx Error Message
3.3 years ago by
John Marshall
3.0k
2
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0
replies
3.0k
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Answer:
A: How can I get the uncompressed size of a BGZIP file ?
3.4 years ago by
John Marshall
3.0k
6
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1
reply
3.7k
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Answer:
A: How to filter out chromosome regions from a .bam file
3.4 years ago by
John Marshall
3.0k
3
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0
replies
3.1k
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Answer:
A: bedtools sort doesn't properly sort
3.6 years ago by
John Marshall
3.0k
6
votes
2
replies
1.6k
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Answer:
A: Does bai file contain chromosome names and their lengths?
3.7 years ago by
John Marshall
3.0k
4
votes
1
reply
1.9k
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Answer:
A: My snakefile won't run because of wildcards-please help!
4.0 years ago by
John Marshall
3.0k
2
votes
0
replies
1.9k
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Answer:
A: How to properly measure the length of a reference genome
4.3 years ago by
John Marshall
3.0k
3
votes
1
reply
1.9k
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Answer:
A: bwa mem | samtools sort failing without any error messages
4.3 years ago by
John Marshall
3.0k
2
votes
2
replies
4.0k
views
Answer:
A: samtools mpileup memory leakage
updated 4.3 years ago by
Ram
43k • written 8.3 years ago by
John Marshall
3.0k
1
vote
1
reply
2.2k
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Answer:
A: [E::faidx_fetch_seq] error with Samtools mpileup?
4.4 years ago by
John Marshall
3.0k
3
votes
2
replies
2.4k
views
Answer:
A: ERROR:SAM to BAM using samtools
4.4 years ago by
John Marshall
3.0k
5
votes
1
reply
3.4k
views
Answer:
A: Samtools mpileup of soft-clipped alignment behaves non-deterministically?
updated 4.4 years ago by
Ram
43k • written 8.4 years ago by
John Marshall
3.0k
2
votes
1
reply
6.7k
views
Answer:
A: Please help me with samtools
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
John Marshall
3.0k
4
votes
0
replies
2.9k
views
Answer:
A: SAMtools-1.2 sort options documentation
updated 4.4 years ago by
Ram
43k • written 8.6 years ago by
John Marshall
3.0k
2
votes
1
reply
3.1k
views
Answer:
A: suppress pysam index warnings.
4.5 years ago by
John Marshall
3.0k
7
votes
1
reply
1.0k
views
Answer:
A: Alternate Tag Types for Picard
4.5 years ago by
John Marshall
3.0k
1
vote
1
reply
3.6k
views
Answer:
A: Pb to Compile Pindel on MacOs x
updated 4.5 years ago by
Ram
43k • written 8.9 years ago by
John Marshall
3.0k
6
votes
2
replies
9.2k
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Answer:
A: Duplicate @Sq Lines In Sam File Header
updated 4.5 years ago by
Ram
43k • written 10.6 years ago by
John Marshall
3.0k
3
votes
0
replies
7.3k
views
Answer:
A: Samtools view Exec format error Help
4.6 years ago by
John Marshall
3.0k
2
votes
1
reply
1.9k
views
Answer:
A: Samtools view error when converting sam to bam file using sc-ATAC-seq data from
4.7 years ago by
John Marshall
3.0k
2
votes
0
replies
25k
views
Answer:
A: Can You Please Tell Me Where I Find Information About .Fai File Format?
4.7 years ago by
John Marshall
3.0k
1
vote
1
reply
2.5k
views
Answer:
A: Parsing tabix with pysam
4.8 years ago by
John Marshall
3.0k
1
vote
0
replies
2.3k
views
Answer:
A: What are valid VCF symbolic alternate alleles for structural variants?
4.8 years ago by
John Marshall
3.0k
6
votes
2
replies
2.5k
views
Answer:
A: structural variants in gnomad and the VCF spec. Why is tabix/bcftools failing ?
4.8 years ago by
John Marshall
3.0k
1
vote
0
replies
2.4k
views
Answer:
A: Having trouble with samtools cat
4.8 years ago by
John Marshall
3.0k
5
votes
0
replies
2.1k
views
Answer:
A: How does bedtools bamtobed calculate end position
5.0 years ago by
John Marshall
3.0k
12
votes
1
reply
59k
views
Answer:
A: Subsampling Bam File With Samtools
updated 5.1 years ago by
Ram
43k • written 10.8 years ago by
John Marshall
3.0k
2
votes
1
reply
3.2k
views
Answer:
A: Bam file MC tag as integer
5.1 years ago by
John Marshall
3.0k
1
vote
0
replies
924
views
Answer:
A: samtools " Assertion `iter->curr_off == iter->off[iter->i].v' failed". "
5.2 years ago by
John Marshall
3.0k
0
votes
0
replies
2.9k
views
Answer:
A: How to use samtools tview goto with long reference sequence name
5.5 years ago by
John Marshall
3.0k
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