User: Kay

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Kay0
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Posts by Kay

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Comment: C: ete3 evol doesnt work on test data
... thanks, seems to work on the test data, and paml test data now, I installed ete toolkit from github in a new conda environment although my data returns a few errors (might gahe to do with my data) ...
written 4 weeks ago by Kay0
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ete3 evol doesnt work on test data
... Hi, I recently installed [ete][1] via conda, so have a new environment for ete. I was able to use it to generate trees using ete3 build -w standard_raxml -a NUP62.aa.fa -o output_tree but when I try to run: ete3 evol -t ECP_EDN_15.nw --alg ECP_EDN_15.fasta -o results1/ --models fb M2 SLR ...
ete3 paml ete written 4 weeks ago by Kay0 • updated 4 weeks ago by WouterDeCoster35k
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Mikado prepare error
... I am trying to use Mikado, a software for identifying a better set of transcripts from multiple assemblies. Been having these error in the congihuration/prepare phase. 2017-12-18 12:26:47,372 - prepare - prepare.py:67 - INFO - setup - MainProcess - Command line: /anaconda3/bin/mikado prepare -- ...
genome assembly rna-seq written 12 months ago by Kay0 • updated 11 months ago by colindaven840

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