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Comment: C: Retrieving Phylop Scores Using R
7.0 years ago by rbronste ▴ 420
0
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0
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1.1k
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Deriving phyloP based branch length scores
conservation phyloP branch phastCons
7.0 years ago by rbronste ▴ 420
0
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0
replies
10.0k
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Comment: C: Retrieving Phylop Scores Using R
7.0 years ago by rbronste ▴ 420
0
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1
reply
10.0k
views
Comment: C: Retrieving Phylop Scores Using R
7.0 years ago by rbronste ▴ 420
0
votes
1
reply
10.0k
views
Comment: C: Retrieving Phylop Scores Using R
7.0 years ago by rbronste ▴ 420
0
votes
1
reply
10.0k
views
Comment: C: Retrieving Phylop Scores Using R
7.0 years ago by rbronste ▴ 420
4
votes
2
replies
4.5k
views
Protein coding mm10 refseq bed
refseq bed mm10
updated 7.0 years ago by ★ 3.9k • written 7.0 years ago by ▴ 420
1
vote
4
replies
2.2k
views
Consensus motif of closely related TFs
motif ChIP-Seq transcription factor sequence PWM
updated 7.0 years ago by ▴ 440 • written 7.1 years ago by ▴ 420
0
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1
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2.3k
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Comment: C: Parsing AME tsv file
7.0 years ago by rbronste ▴ 420
5
votes
7
replies
2.3k
views
Parsing AME tsv file
meme ame tsv bed motif
7.0 years ago by rbronste ▴ 420
0
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1
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19k
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Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
7.0 years ago by rbronste ▴ 420
0
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1
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19k
views
Comment: C: How To Randomly Sample A Subset Of Lines From A Bed File
7.0 years ago by rbronste ▴ 420
0
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0
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1.9k
views
Comment: C: BEDOPS sort-bed BED_LINE_LEN question
7.0 years ago by rbronste ▴ 420
1
vote
2
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1.9k
views
BEDOPS sort-bed BED_LINE_LEN question
bedops bed sort-bed intervals
7.0 years ago by rbronste ▴ 420
0
votes
1
reply
3.5k
views
Comment: C: Installing and running pyGenomeTracks
7.1 years ago by rbronste ▴ 420
0
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0
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3.5k
views
Comment: C: Installing and running pyGenomeTracks
7.1 years ago by rbronste ▴ 420
0
votes
0
replies
3.5k
views
Comment: C: Installing and running pyGenomeTracks
7.1 years ago by rbronste ▴ 420
3
votes
1
reply
1.1k
views
Correlating putative enhancer elements with gene expression
RNA-Seq ATAC-seq enhancer gene expression
updated 7.1 years ago by ★ 4.2k • written 7.1 years ago by ▴ 420
0
votes
1
reply
1.9k
views
FIMO vs AME - true positive and false positives across search tools
meme ame fimo motif
updated 7.1 years ago by 20 • written 7.2 years ago by ▴ 420
0
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0
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2.2k
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Comment: C: Consensus motif of closely related TFs
7.1 years ago by rbronste ▴ 420
13
votes
31
replies
12k
views
12 follow
BagFoot TF foot printing
R bagfoot bagfootr ChIP-Seq
updated 8 months ago by • 0 • written 8.0 years ago by ▴ 420
0
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0
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2.3k
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Comment: C: FIMO output that preserves padj values
7.2 years ago by rbronste ▴ 420
3
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5
replies
2.3k
views
FIMO output that preserves padj values
ChIP-Seq motifs FIMO MEME DESeq2
7.2 years ago by rbronste ▴ 420
0
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0
replies
1.6k
views
bwtool stalled liftover
bwtool bigwig liftover
7.2 years ago by rbronste ▴ 420
0
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1
reply
9.0k
views
Comment: C: Table browser +/- 2Kb of TSS export
7.2 years ago by rbronste ▴ 420
0
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1
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9.0k
views
Comment: C: Table browser +/- 2Kb of TSS export
7.2 years ago by rbronste ▴ 420
0
votes
1
reply
9.0k
views
Comment: C: Table browser +/- 2Kb of TSS export
7.2 years ago by rbronste ▴ 420
0
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1
reply
9.0k
views
Comment: C: Table browser +/- 2Kb of TSS export
7.2 years ago by rbronste ▴ 420
0
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1
reply
9.0k
views
Comment: C: Table browser +/- 2Kb of TSS export
7.2 years ago by rbronste ▴ 420
0
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0
replies
9.0k
views
Comment: C: Table browser +/- 2Kb of TSS export
7.2 years ago by rbronste ▴ 420
5
votes
6
replies
3.2k
views
Common gene names list to BED with +/- TSS intervals
RNA-Seq
updated 7.2 years ago by 36k • written 7.2 years ago by ▴ 420
0
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1
reply
9.0k
views
Comment: C: Table browser +/- 2Kb of TSS export
7.2 years ago by rbronste ▴ 420
0
votes
1
reply
3.2k
views
Comment: C: Common gene names list to BED with +/- TSS intervals
7.2 years ago by rbronste ▴ 420
0
votes
1
reply
4.6k
views
Comment: C: Closest gene to set of intervals
7.2 years ago by rbronste ▴ 420
0
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0
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4.6k
views
Comment: C: Closest gene to set of intervals
7.2 years ago by rbronste ▴ 420
0
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1
reply
4.6k
views
Comment: C: Closest gene to set of intervals
7.2 years ago by rbronste ▴ 420
0
votes
1
reply
1.5k
views
RSAT gives strange motif calls
RSAT motif ChIP-Seq
updated 7.4 years ago by ▴ 10 • written 7.6 years ago by ▴ 420
1
vote
4
replies
3.7k
views
bwtool matrix error - invalid signed integer
bwtool matrix software error
updated 7.4 years ago by 20 • written 8.7 years ago by ▴ 420
2
votes
5
replies
4.1k
views
Motif database of choice
motif RSAT ChIP-Seq
updated 7.4 years ago by • 0 • written 8.2 years ago by ▴ 420
2
votes
2
replies
2.6k
views
FIMO target coordinates in fasta file
fimo meme motif fasta
updated 7.4 years ago by 89k • written 7.8 years ago by ▴ 420
1
vote
2
replies
1.7k
views
Fimo output for classes of TFs from specific database
ChIP-Seq fimo meme
updated 7.5 years ago by 36k • written 7.5 years ago by ▴ 420
6
votes
11
replies
3.8k
views
blastn errors following building of database
blast blastn makeblastdb
updated 7.5 years ago by 20 • written 7.5 years ago by ▴ 420
0
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1
reply
3.8k
views
Comment: C: blastn errors following building of database
7.5 years ago by rbronste ▴ 420
0
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1
reply
3.8k
views
Comment: C: blastn errors following building of database
7.5 years ago by rbronste ▴ 420
0
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1
reply
3.8k
views
Comment: C: blastn errors following building of database
7.5 years ago by rbronste ▴ 420
0
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0
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3.8k
views
Comment: C: blastn errors following building of database
7.5 years ago by rbronste ▴ 420
0
votes
1
reply
3.8k
views
Comment: C: blastn errors following building of database
7.5 years ago by rbronste ▴ 420
3
votes
3
replies
3.1k
views
Extracting the exact motif location from FIMO
meme fimo motif ChIP-Seq
updated 7.6 years ago by 35k • written 7.6 years ago by ▴ 420
0
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1
reply
4.1k
views
Comment: C: FIMO output to bed
7.6 years ago by rbronste ▴ 420
4
votes
8
replies
6.1k
views
samtools faidx error
samtools faidx
updated 7.6 years ago by ▴ 20 • written 8.3 years ago by ▴ 420
294 results • Page 3 of 6
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