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0
votes
0
replies
141
views
Music2 human to mouse deconvolution
deconvolution
liftover
music2
5 weeks ago by
rbronste
▴ 420
0
votes
0
replies
234
views
scVelo cell transitions from marker gene expressing cells
velocity
scvelo
RNA
4 months ago by
rbronste
▴ 420
2
votes
2
replies
392
views
Splice junction SNPs
SNP
splicing
isoform
updated 5 months ago by
Jeremy Leipzig
22k • written 5 months ago by
rbronste
▴ 420
0
votes
0
replies
666
views
Comment:
Comment: STARsolo seg fault without readMapNumber flag
5 months ago by
rbronste
▴ 420
0
votes
1
reply
666
views
Comment:
Comment: STARsolo seg fault without readMapNumber flag
5 months ago by
rbronste
▴ 420
0
votes
2
replies
666
views
Comment:
Comment: STARsolo seg fault without readMapNumber flag
5 months ago by
rbronste
▴ 420
0
votes
1
reply
666
views
Comment:
Comment: STARsolo seg fault without readMapNumber flag
5 months ago by
rbronste
▴ 420
3
votes
9
replies
666
views
STARsolo seg fault without readMapNumber flag
STAR
RNA-seq
STARsolo
Velocyto
updated 5 months ago by
Ram
43k • written 5 months ago by
rbronste
▴ 420
0
votes
0
replies
634
views
Comment:
Comment: Adding Salmon Alevin counts to clustered Seurat object
8 months ago by
rbronste
▴ 420
0
votes
1
reply
634
views
Comment:
Comment: Adding Salmon Alevin counts to clustered Seurat object
8 months ago by
rbronste
▴ 420
2
votes
4
replies
634
views
Adding Salmon Alevin counts to clustered Seurat object
salmon
seurat
alevin
8 months ago by
rbronste
▴ 420
0
votes
0
replies
1.2k
views
Converting objects between Seurat versions
Seurat
9 months ago by
rbronste
▴ 420
0
votes
1
reply
818
views
Comment:
Comment: RangedSummarizedExperiment to Sparse Matrix
13 months ago by
rbronste
▴ 420
1
vote
3
replies
818
views
RangedSummarizedExperiment to Sparse Matrix
dgCMatrix
sparse
RangedSummarizedExperiment
matrix
updated 13 months ago by
ATpoint
81k • written 13 months ago by
rbronste
▴ 420
0
votes
0
replies
795
views
Comment:
Comment: Combining TF PWMs
15 months ago by
rbronste
▴ 420
0
votes
0
replies
795
views
Comment:
Comment: Combining TF PWMs
15 months ago by
rbronste
▴ 420
1
vote
3
replies
795
views
Combining TF PWMs
TF
Jaspar
motif
PWM
15 months ago by
rbronste
▴ 420
0
votes
0
replies
345
views
Signac MACS2 peak shape question
snATAC-seq
snRNA-seq
signac
multiome
seurat
20 months ago by
rbronste
▴ 420
0
votes
0
replies
627
views
Comment:
Comment: Adding to 10X genome.fa and genes.gtf files
23 months ago by
rbronste
▴ 420
2
votes
2
replies
627
views
Adding to 10X genome.fa and genes.gtf files
10x
Genomics
multiome
scRNA-seq
23 months ago by
rbronste
▴ 420
0
votes
0
replies
608
views
Comment:
Comment: Identifying rosa locus expression in snRNA-seq
2.0 years ago by
rbronste
▴ 420
0
votes
0
replies
608
views
Comment:
Comment: Identifying rosa locus expression in snRNA-seq
2.0 years ago by
rbronste
▴ 420
0
votes
3
replies
608
views
Identifying rosa locus expression in snRNA-seq
rosa
locus
snRNA-seq
reporter
scRNA-seq
2.0 years ago by
rbronste
▴ 420
2
votes
3
replies
2.9k
views
liftOver narrowPeak file
liftOver
Assembly
updated 2.5 years ago by
kai_bio
▴ 50 • written 7.2 years ago by
rbronste
▴ 420
1
vote
2
replies
3.5k
views
BED intersects/overlaps output for Venn diagrams - single column
bedtools
bedops
updated 3.5 years ago by
esimonova.me
▴ 20 • written 6.9 years ago by
rbronste
▴ 420
3
votes
12
replies
6.8k
views
Blacklisted regions for mm10
ChIP-Seq
blacklisted regions
updated 3.6 years ago by
ATpoint
81k • written 7.0 years ago by
rbronste
▴ 420
4
votes
3
replies
927
views
Seurat code availability for published papers
seurat
scRNA-seq
4.0 years ago by
rbronste
▴ 420
5
votes
2
replies
2.9k
views
Official gene symbol list to BED file
bed
gene symbol
DEseq2
updated 4.1 years ago by
nathan bowen
▴ 20 • written 6.2 years ago by
rbronste
▴ 420
0
votes
1
reply
1.5k
views
Comment:
C: grep sorting question
4.2 years ago by
rbronste
▴ 420
0
votes
0
replies
1.5k
views
Comment:
C: grep sorting question
4.2 years ago by
rbronste
▴ 420
0
votes
1
reply
1.5k
views
Comment:
C: grep sorting question
4.2 years ago by
rbronste
▴ 420
3
votes
11
replies
1.5k
views
grep sorting question
grep
awk
sed
bash
unix
updated 4.2 years ago by
Ram
43k • written 4.2 years ago by
rbronste
▴ 420
0
votes
1
reply
1.5k
views
Comment:
C: grep sorting question
4.2 years ago by
rbronste
▴ 420
0
votes
1
reply
4.9k
views
Comment:
Comment: multiple bed - merge regions IF overlapping more than xx percent of size
updated 15 months ago by
Ram
43k • written 4.2 years ago by
rbronste
▴ 420
0
votes
0
replies
738
views
ggplot2 loess curve application to 2 dataframes
ggplot2
ggplot
4.2 years ago by
rbronste
▴ 420
5
votes
3
replies
2.5k
views
EnhancedVolcano R pdf export size
EnhancedVolcano
volcano plot
R
updated 4.2 years ago by
zx8754
11k • written 4.2 years ago by
rbronste
▴ 420
0
votes
1
reply
2.5k
views
Comment:
C: EnhancedVolcano R pdf export size
4.2 years ago by
rbronste
▴ 420
0
votes
0
replies
736
views
Comment:
C: Difficult filtering scenario of BED file
4.2 years ago by
rbronste
▴ 420
2
votes
3
replies
736
views
Difficult filtering scenario of BED file
awk
sed
grep
4.2 years ago by
rbronste
▴ 420
4
votes
6
replies
843
views
awk for interval midpoints and length
awk
updated 4.2 years ago by
zx8754
11k • written 4.2 years ago by
rbronste
▴ 420
0
votes
1
reply
2.5k
views
Comment:
C: How to extend variable length intervals to the same final length?
4.3 years ago by
rbronste
▴ 420
1
vote
0
replies
10k
views
Comment:
C: Enhanced Volcano removal of labels
4.3 years ago by
rbronste
▴ 420
12
votes
4
replies
10k
views
Enhanced Volcano removal of labels
EnhancedVolcano
volcano plot
updated 4.3 years ago by
Kevin Blighe
87k • written 4.3 years ago by
rbronste
▴ 420
0
votes
0
replies
10k
views
Comment:
C: Enhanced Volcano removal of labels
4.3 years ago by
rbronste
▴ 420
0
votes
1
reply
4.2k
views
Comment:
C: Color labeled points in Enhanced Volcano
4.3 years ago by
rbronste
▴ 420
4
votes
5
replies
4.2k
views
Color labeled points in Enhanced Volcano
volcano plot
EnhancedVolcano
4.3 years ago by
rbronste
▴ 420
0
votes
1
reply
4.2k
views
Comment:
C: Color labeled points in Enhanced Volcano
4.3 years ago by
rbronste
▴ 420
8
votes
3
replies
2.6k
views
Adding ggplot2 chromosome position variable
ggplot2
plot
genomic ranges
R
updated 4.4 years ago by
bernatgel
★ 3.4k • written 4.4 years ago by
rbronste
▴ 420
2
votes
2
replies
815
views
Plotting matrix of values around specific genomic position
R
data.frame
matrix
ggplot2
updated 4.4 years ago by
zx8754
11k • written 4.4 years ago by
rbronste
▴ 420
0
votes
1
reply
2.4k
views
Comment:
C: Common gene names list to BED with +/- TSS intervals
4.4 years ago by
rbronste
▴ 420
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