User: dongchenchen
dongchenchen • 30
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Posts by dongchenchen
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... Yes. I was able to generate the graph live above. For the plotting part, Excel is enough. ggplot for R or Matplotlib for Python would do fair job as well. My initial difficulty was to prepare data ready to generate graph from the raw annotation exported from KEGG website. I wrote a python script to ...
written 4 weeks ago by
dongchenchen • 30
0
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1
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... I have figured out. Thank you. ...
written 23 months ago by
dongchenchen • 30
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1.4k
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1
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... Hi,
I am doing a RNA-Seq analysis and want to map my reads back to the assembly I got from Trinity. Below are my commands. I was hoping to get a single output file named low1.bam. Instead I got a lot of tmp files named like below:
samtools.40306.3656.tmp.0000.bam,
samtools.40306.3656.tmp.0001.bam
. ...
written 23 months ago by
dongchenchen • 30
• updated
23 months ago by
h.mon ♦ 32k
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4.2k
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15 follow
4
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... I have assigned KO numbers to my assembled transcriptome and would like to generate a KEGG pathway classification with x axis show gene numbers and percentage for each different terms. There seems exist a standard format for the chart that people use for publication. I would like to know the tool th ...
written 24 months ago by
dongchenchen • 30
• updated
9 days ago by
Leite • 1.1k
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For How to generate KEGG pathway classification chart
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For bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the single .bam file?
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