User: dongchenchen

dongchenchen • 30

Reputation:: 30
Status:: New User
Location:
Last seen:: 1 month ago
Joined:: 4 years, 1 month ago
Email:: d***********@live.com

Posts by dongchenchen

votes

answers

4.2k

views

answers

Comment: C: How to generate KEGG pathway classification chart

... Yes. I was able to generate the graph live above. For the plotting part, Excel is enough. ggplot for R or Matplotlib for Python would do fair job as well. My initial difficulty was to prepare data ready to generate graph from the raw annotation exported from KEGG website. I wrote a python script to ...

written 4 weeks ago by dongchenchen • 30

votes

answer

1.4k

views

answers

Comment: A: bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the si

... I have figured out. Thank you. ...

written 23 months ago by dongchenchen • 30

votes

answer

1.4k

views

answer

bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the single .bam file?

... Hi, I am doing a RNA-Seq analysis and want to map my reads back to the assembly I got from Trinity. Below are my commands. I was hoping to get a single output file named low1.bam. Instead I got a lot of tmp files named like below: samtools.40306.3656.tmp.0000.bam, samtools.40306.3656.tmp.0001.bam . ...

bowtie2 alignment samtools sort written 23 months ago by dongchenchen • 30 • updated 23 months ago by h.mon ♦ 32k

votes

answers

4.2k

views

15 follow

answers

How to generate KEGG pathway classification chart

... I have assigned KO numbers to my assembled transcriptome and would like to generate a KEGG pathway classification with x axis show gene numbers and percentage for each different terms. There seems exist a standard format for the chart that people use for publication. I would like to know the tool th ...

kegg rna-seq written 24 months ago by dongchenchen • 30 • updated 9 days ago by Leite • 1.1k

Latest awards to dongchenchen

Popular Question 21 months ago, created a question with more than 1,000 views. For How to generate KEGG pathway classification chart

Popular Question 21 months ago, created a question with more than 1,000 views. For bowtie2 piped to samtools created many samtools.tmp.bam files, how to get the single .bam file?