User: RogelioG

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RogelioG0
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Posts by RogelioG

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Comment: A: Row-specific findOverlaps of two GRanges datasets
... data and part of script I am running: A <- makeGRangesFromDataFrame(a) B <- makeGRangesFromDataFrame(b) A seqnames ranges strand 12 ENSMUST00000138535 [61767414, 61851540] * 21 ENSMUST00000016309 [74288246, ...
written 4 days ago by RogelioG0
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Row-specific findOverlaps of two GRanges datasets
... Hi all, I am working on a way to find sense/antisense encoded transcripts and the amount of overlap they have. One final piece of code I cant get together: I have a two dataframes (GRanges) with EnsT ids and start and end position of each transcript, both for sense and antisene encoded transcript. ...
overlap R granges written 4 days ago by RogelioG0
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Comment: A: how to process spike-in with bamCoverage and plotHeatmap (with deeptools)
... I actually got a question back for you: what vendor did you obtain the Drosphilla genome spike-in. I am looking for it myself as well. thanks. ...
written 5 months ago by RogelioG0

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