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Posts by lionair
Comment: C: Understanding SAM file format
... The fields after 11th field are optional fields. Hope this link helps. It listed all the optional fields specification. https://samtools.github.io/hts-specs/SAMtags.pdf ...
... Dear all, I'd like to know how long does it usually takes for Admixture analysis to be done? I am using a 372G size VCF file which is a combination of SNPs from 1KGP, and another 3 populations. I tried the following commands and it took me ages to get it done. I'm just wondering if this is normal? ...
Answer: A: Bam2Cfg Parameter Description
... Hi, I also have a question on Bam2Cfg Parameter Description. What is the difference between minimum mapping quality and alternative mapping quality? If lets say I'd like to use minimum mapping quality 30, do I need to include -m ( *Using mapping quality instead of alternative mapping quality*) or ...
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