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4
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0
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22k
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Answer: A: using python for pairwise alignment
updated 5.3 years ago by 45k • written 10.9 years ago by ★ 2.5k
0
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0
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3.9k
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Answer: A: How to account for missing residues when docking small molecule ligands into a P
updated 5.4 years ago by 45k • written 11.0 years ago by ★ 2.5k
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1
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1.9k
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Answer: A: Rotamers state in protein design
updated 5.4 years ago by 45k • written 11.0 years ago by ★ 2.5k
7
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1
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3.7k
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Answer: A: protein 3-D structure prediction
updated 5.4 years ago by 45k • written 11.0 years ago by ★ 2.5k
1
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1
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2.6k
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Answer: A: Automatically Recognize Which Chains Are From Protein And Which Chains From Liga
updated 5.4 years ago by 45k • written 11.0 years ago by ★ 2.5k
2
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3.7k
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Answer: A: PDB FILE, homology modelling
updated 5.4 years ago by 45k • written 11.1 years ago by ★ 2.5k
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0
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2.0k
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Answer: A: downloading pdbids and chains of heterodimers
updated 5.4 years ago by 45k • written 11.1 years ago by ★ 2.5k
2
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0
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7.7k
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Answer: A: merge pdb chains
8.6 years ago by João Rodrigues ★ 2.5k
0
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0
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7.4k
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Answer: A: mutation using PyMOL
8.8 years ago by João Rodrigues ★ 2.5k
2
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0
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2.2k
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Answer: A: Which programs generate good images of structural biology models or molecular dy
8.8 years ago by João Rodrigues ★ 2.5k
0
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0
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1.7k
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Answer: A: Homology modelling template
9.0 years ago by João Rodrigues ★ 2.5k
1
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0
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1.7k
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Answer: A: Is there any correlation between molecule sizes and their interaction energy aft
9.0 years ago by João Rodrigues ★ 2.5k
3
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1
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4.8k
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Answer: A: aligning a bound ligand from one PDB complex to a reference structure
9.0 years ago by João Rodrigues ★ 2.5k
0
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0
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5.4k
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Answer: Answer: Cartesian to internal coordinates (z-matrix representation)
updated 2.4 years ago by 45k • written 10.0 years ago by ★ 2.5k
2
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0
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4.6k
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Answer: Answer: Beginner pymol user
updated 2.3 years ago by 45k • written 10.0 years ago by ★ 2.5k
1
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0
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2.7k
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Answer: Answer: Missing segments of protein and minimization
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.5k
1
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1
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3.1k
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Answer: Answer: Protein RNA docking
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.5k
0
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0
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4.8k
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Answer: Answer: Struggle to loop over multiple files with BioPython
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.5k
4
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1
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3.7k
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Answer: Answer: Any free tool for Calculating Gasteiger-Hückel charges for ligands?
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.5k
2
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1
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4.0k
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Answer: Answer: Ligand minimization Using prodrg
updated 2.9 years ago by 45k • written 10.1 years ago by ★ 2.5k
1
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0
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3.5k
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Answer: A: RMSD in membrane protein simulation
10.1 years ago by João Rodrigues ★ 2.5k
3
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0
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5.2k
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Answer: A: How extract coordinates of surface atoms of a protein from a pdb file?
10.1 years ago by João Rodrigues ★ 2.5k
1
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1
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2.6k
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Answer: Answer: BioPython: Residues size differ from position
updated 2.5 years ago by 45k • written 10.2 years ago by ★ 2.5k
3
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2
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14k
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Answer: A: running modeller through python scripts
10.3 years ago by João Rodrigues ★ 2.5k
1
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0
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21k
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Answer: Answer: Renumbering Residues in PyMOL
updated 3.1 years ago by 45k • written 10.3 years ago by ★ 2.5k
1
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0
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2.4k
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Answer: A: Micro RNA docking
10.4 years ago by João Rodrigues ★ 2.5k
2
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1
reply
3.6k
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Answer: Answer: Energy minimization for protein model refinement
updated 3.2 years ago by 45k • written 10.4 years ago by ★ 2.5k
3
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0
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6.1k
views
Answer: Answer: which are the best docking softwares available?
updated 3.3 years ago by 45k • written 10.6 years ago by ★ 2.5k
1
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1
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3.3k
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Answer: A: Setting up an alert for new human PDB ligands
10.6 years ago by João Rodrigues ★ 2.5k
1
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0
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1.9k
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Answer: A: similarity of 3D and sequential structure of protein in three bacteria?
10.6 years ago by João Rodrigues ★ 2.5k
2
votes
1
reply
17k
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Answer: Answer: ImportError: No module named pymol (Mac)
updated 3.4 years ago by 45k • written 10.7 years ago by ★ 2.5k
1
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0
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2.2k
views
Answer: Answer: Looking for a protein-rna docking tool
updated 3.4 years ago by 45k • written 10.7 years ago by ★ 2.5k
1
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1
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3.7k
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Answer: A: how find relative solvent accesibility
10.7 years ago by João Rodrigues ★ 2.5k
1
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1
reply
2.3k
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Answer: Answer: SCOP Protein domains + order/disorder
updated 3.4 years ago by 45k • written 10.7 years ago by ★ 2.5k
1
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1
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3.8k
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Answer: Answer: Analyzing 3D protein structure. Finding out which amino acids are close to each
updated 3.4 years ago by 45k • written 10.7 years ago by ★ 2.5k
0
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0
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3.0k
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Answer: Answer: solvent accebility in PDBID
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 2.5k
0
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0
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4.4k
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Answer: Answer: how to compare protein sequence in Python
updated 3.5 years ago by 45k • written 10.8 years ago by ★ 2.5k
0
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0
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10k
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Answer: Answer: Converting 1D arrays to 3D arrays
updated 3.5 years ago by 102k • written 10.8 years ago by ★ 2.5k
0
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0
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2.0k
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Answer: Answer: How to differentiate ordered and disordered protein complexes in pdb?
updated 3.5 years ago by 45k • written 10.9 years ago by ★ 2.5k
3
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0
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3.8k
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Answer: Answer: Why there is an alternate location indicator (position 17) in PDB file?
updated 3.5 years ago by 45k • written 10.9 years ago by ★ 2.5k
0
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0
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5.6k
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Answer: Answer: How to do analysis of ZDOCK server O/P of Protein-Protein docking scores.
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.5k
4
votes
1
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15k
views
Answer: Answer: Converting ANY blast output file to an alignment fasta file.
updated 3.6 years ago by 45k • written 10.9 years ago by ★ 2.5k
1
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1
reply
2.4k
views
Answer: Answer: Tool for visualizing proteins based on amino-acid structure?
updated 3.6 years ago by 45k • written 11.0 years ago by ★ 2.5k
1
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0
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5.0k
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Answer: A: How to choose the best structure from the trajectory file after doing a Molecula
11.0 years ago by João Rodrigues ★ 2.5k
1
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0
replies
3.4k
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Answer: A: Energy Minimization Result Problem
11.1 years ago by João Rodrigues ★ 2.5k
1
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0
replies
6.0k
views
Answer: A: Protein Loop Rmsd Calculations
11.1 years ago by João Rodrigues ★ 2.5k
2
votes
0
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3.8k
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Answer: A: Protein Folding Trajectory Data
11.3 years ago by João Rodrigues ★ 2.5k
1
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0
replies
33k
views
Answer: A: Calculate Rmsd Between Two Sets Of Residues In Pymol
11.4 years ago by João Rodrigues ★ 2.5k
3
votes
0
replies
18k
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Answer: A: Fda Sends A Warning Letter To 23Andme - Personal Genomics Service Marketing To B
11.5 years ago by João Rodrigues ★ 2.5k
2
votes
1
reply
3.7k
views
Answer: Answer: Standalone Tool-Protein Primary, Secondary & Teritary Prediction
updated 2.3 years ago by 45k • written 11.5 years ago by ★ 2.5k
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