User: wanaga3166

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wanaga31660
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Posts by wanaga3166

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Comment: C: Iteration to count the number of raw reads
... Thank you Martombo. Your solution works. I will be more careful with the backquotes. ...
written 9 days ago by wanaga31660
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Comment: C: Iteration to count the number of raw reads
... If you watch my initial code (in the top) of this post, I put the back quote as you wrote. And I can't save the number of raw reads in my text table (count_read_evolution_trim_test.txt). The problem in my code, that a I have two backquote in this line: RAW_READS=`gunzip -c $f1 | echo $((`wc - ...
written 9 days ago by wanaga31660
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Comment: C: Iteration to count the number of raw reads
... When I did this command line: gunzip -c $f1 | echo $((`wc -l`/4)) It works, I obtained the number of raw reads. I just want to put the number of raw reads in a table, like in this example. file | raw_read_number my_file_1 | 130000 my_file_2 | 160000 my_file_3 | 200000 I don't understand where I d ...
written 9 days ago by wanaga31660
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Comment: A: Iteration to count the number of raw reads
... When I did this command line: gunzip -c $f1 | echo $((`wc -l`/4)) It works, I obtained the number of raw reads. I just want to put the number of raw reads in a table, like in this example. file | raw_read_number ------------------------------- my_file_1 | 130000 ----------------------------- ...
written 9 days ago by wanaga31660
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Iteration to count the number of raw reads
... Hi everyone, I made a short script to count the number of raw reads (fastq.gz) in my folder. The results will save in a text file (.txt). echo "We count the number of reads for each file (fastq.gz)." echo "file\traw_reads\ttrimmed_reads" > count_read_evolution_trim_test.txt for f1 i ...
raw reads sequence shell script written 9 days ago by wanaga31660 • updated 9 days ago by 2nelly160

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