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Showing :
questions
0
votes
6
replies
945
views
Umi dedup with fastp
fastp
updated 9 months ago by
i.sudbery
19k • written 9 months ago by
samuel
▴ 240
7
votes
4
replies
1.1k
views
multiprocessing versus multithreading
parallel
processing
multithreading
updated 11 months ago by
Matthias Zepper
4.5k • written 11 months ago by
samuel
▴ 240
4
votes
3
replies
660
views
Fastqs different lanes
fastq
updated 12 months ago by
benformatics
3.9k • written 12 months ago by
samuel
▴ 240
5
votes
2
replies
823
views
Somatic truth set
benchmarking
Somatic
updated 13 months ago by
lethalfang
▴ 140 • written 13 months ago by
samuel
▴ 240
4
votes
4
replies
682
views
Hard clip fastq
fastq
updated 13 months ago by
GenoMax
141k • written 13 months ago by
samuel
▴ 240
0
votes
2
replies
952
views
GIAB Truth Set
GIAB
13 months ago by
samuel
▴ 240
6
votes
5
replies
2.3k
views
how to get around snakemake with different wildcards input to output rule
snakemake
14 months ago by
samuel
▴ 240
1
vote
4
replies
1.5k
views
Merge several input files to single output file snakemake
snakemake
updated 14 months ago by
raphael.B
▴ 520 • written 14 months ago by
samuel
▴ 240
7
votes
4
replies
832
views
snakemake wildcard in shell
snakemake
updated 14 months ago by
GenoMax
141k • written 14 months ago by
samuel
▴ 240
0
votes
0
replies
342
views
Next generation sequencing variant calling pipeline
WGS
Targeted
WES
Sequencing
updated 14 months ago by
ATpoint
82k • written 14 months ago by
samuel
▴ 240
0
votes
0
replies
416
views
Tumour only B-allele frequency
Frequency
B-allele
2.1 years ago by
samuel
▴ 240
0
votes
1
reply
398
views
germline heterozygous SNPs
germline
SNPs
heterozygous
updated 2.1 years ago by
Pierre Lindenbaum
161k • written 2.1 years ago by
samuel
▴ 240
1
vote
1
reply
2.2k
views
Extract list of rsIDs from plink
plink
updated 2.1 years ago by
zx8754
11k • written 2.1 years ago by
samuel
▴ 240
0
votes
1
reply
691
views
plink vcf
plink
updated 2.3 years ago by
chrchang523
10k • written 2.3 years ago by
samuel
▴ 240
7
votes
3
replies
2.0k
views
snakemake to merge bams from multiple samples
snakemake
updated 2.8 years ago by
Jianyu
▴ 580 • written 2.8 years ago by
samuel
▴ 240
2
votes
1
reply
668
views
How to show statistical significance of overlap of CTCF binding sites
RNA-Seq
genome
3.1 years ago by
samuel
▴ 240
22
votes
23
replies
32k
views
8 follow
Guppy basecaller ONT
ONT
5.0 years ago by
samuel
▴ 240
2
votes
2
replies
4.4k
views
pybedtools intersect using additional options
pybedtools
5.4 years ago by
samuel
▴ 240
2
votes
1
reply
2.9k
views
TPM with Ballgown?
RNA-Seq
updated 5.7 years ago by
Siegfried
▴ 10 • written 6.9 years ago by
samuel
▴ 240
0
votes
0
replies
1.3k
views
paired analysis ballgown
RNA-Seq
5.8 years ago by
samuel
▴ 240
8
votes
6
replies
3.8k
views
Blast many read sequences
alignment
contamination
blast
reads
updated 5.9 years ago by
lakhujanivijay
5.8k • written 5.9 years ago by
samuel
▴ 240
1
vote
2
replies
2.0k
views
Extract random number of transcript and exons from gencode annotation
genome
sequencing
updated 6.2 years ago by
michael.ante
★ 3.8k • written 6.2 years ago by
samuel
▴ 240
1
vote
5
replies
2.9k
views
NA for gff compare class code
RNA-Seq
6.3 years ago by
samuel
▴ 240
1
vote
2
replies
2.1k
views
GENCODE v.27 BED 12 file
genome
next-gen
sequence
updated 6.3 years ago by
michael.ante
★ 3.8k • written 6.3 years ago by
samuel
▴ 240
0
votes
7
replies
1.6k
views
Extract FASTA if two matches
sequence
updated 6.4 years ago by
cpad0112
21k • written 6.4 years ago by
samuel
▴ 240
2
votes
1
reply
1.4k
views
Extracting string from every other line
sequencing
alignment
sequence
updated 6.8 years ago by
Matteo Schiavinato
★ 3.6k • written 6.8 years ago by
samuel
▴ 240
4
votes
3
replies
13k
views
compare two fasta files
alignment
sequence
blast
updated 6.9 years ago by
Petr Ponomarenko
★ 2.8k • written 6.9 years ago by
samuel
▴ 240
1
vote
1
reply
2.9k
views
HISAT annotation file?
RNA-Seq
7.1 years ago by
samuel
▴ 240
2
votes
0
replies
3.7k
views
StringTie final sample gtf
RNA-Seq
updated 7.1 years ago by
GouthamAtla
12k • written 7.1 years ago by
samuel
▴ 240
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