User: liu_ming_xin

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liu_ming_xin10
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2 years, 2 months ago
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2 years, 9 months ago
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Posts by liu_ming_xin

<prev • 6 results • page 1 of 1 • next >
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Comment: C: problem using FastqExtract.pl script
... well, I check with your suggestion and it turns out to be a problem of the header. However, even if I crop the header both in fastq files and blast results to make them look the same, the error message "could not open file (header)" still exists. Now, I am not sure whether I use this script in a pr ...
written 2.2 years ago by liu_ming_xin10
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Comment: C: problem using FastqExtract.pl script
... Hi there, It might be a problem with the blast because I first convert the fastq file to fasta file which I then used to perform the blastn task. However, I used the fastq file to go through the FastqExtract script against the fasta blast results. The reason I did so is I cannot directly perform th ...
written 2.2 years ago by liu_ming_xin10
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Comment: C: problem using FastqExtract.pl script
... Hi Titus, Thank you for answering my question. The command lines are about using the perl script FastqExtract.pl which I put in the same directory with all my fastq files and blastn results. Hope the command lines help clarify my question. Cheers $ perl FastqExtract.pl what is the name of the BLA ...
written 2.2 years ago by liu_ming_xin10
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problem using FastqExtract.pl script
... Hi all, Recently, I tried to use the perl script FastqExtract.pl to extract paired FASTQ reads based on the BLAST outputs but error occurred and said “could not open file”. I converted the fastq files to fasta files before the blastn task, did this cause any problem for downstream analysis? Then, ...
fastq mitochondrial genome ngs written 2.2 years ago by liu_ming_xin10
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Comment: C: install obitools error
... Hi Frederic, Thank you very much. It really solved my problem. Cheers, Mingxin ...
written 2.6 years ago by liu_ming_xin10
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install obitools error
... Hello, I was using command $python get-obitools.py to install the obitools in Ubuntu 16.04.1 LTS x86_64. Just fail to successfully install in my laptop. The error reports like below: /tmp/tmpzfS5CP/obitools.zip Traceback (most recent call last): File "get-obitools.py", line 45234, in main() ...
metabarcoding ubuntu next-gen obitools written 2.8 years ago by liu_ming_xin10 • updated 4 months ago by Roman Luštrik80

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