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1
vote
3
replies
1.2k
views
Clumping with r2=0 and 250kb radius in plink
plink clump
20 months ago by landscape95 ▴ 190
2
votes
7
replies
8.0k
views
7 follow
Downloading from GEO
GEO
updated 2.6 years ago by ★ 2.4k • written 8.0 years ago by ▴ 190
2
votes
2
replies
1.0k
views
PRS with multiple panels of SNP weights
PRS
3.0 years ago by landscape95 ▴ 190
0
votes
0
replies
2.1k
views
MTG2 error forrtl: severe (174): SIGSEGV, segmentation fault occurred
MTG2
updated 5.1 years ago by 20 • written 6.4 years ago by ▴ 190
4
votes
1
reply
1.7k
views
Single cell Drop-Seq question
singlecell
updated 5.2 years ago by 20 • written 7.1 years ago by ▴ 190
5
votes
6
replies
8.3k
views
Plink2 error: Skipping --glm regression on phenotype 'PHENO1' since variance inflation factor for covariate 'COVAR1' is too high.
GWAS PLINK
updated 5.7 years ago by ▴ 10 • written 6.5 years ago by ▴ 190
0
votes
2
replies
1.2k
views
Estimate the genomic relationship between Discovery and Target sample in PRS
GWAS PRS
updated 6.0 years ago by ★ 4.8k • written 6.0 years ago by ▴ 190
1
vote
3
replies
2.4k
views
Adjusting binary phenotype (case/ctrl) for Polygenic Risk Score (PRS)
PRS
updated 6.1 years ago by ★ 4.8k • written 6.1 years ago by ▴ 190
2
votes
2
replies
2.2k
views
Infer pedigree from Kinship coefficients
GWAS Kinship
updated 6.2 years ago by ▴ 20 • written 6.3 years ago by ▴ 190
1
vote
1
reply
2.2k
views
PRSice PRS calculation warning Mismatched SNPs. Is it due to using multi-covariate for SNP effect size?
GWAS PRSice
updated 6.3 years ago by ★ 4.8k • written 6.5 years ago by ▴ 190
2
votes
1
reply
1.5k
views
PRSice threshold result is not as expected
GWAS PRSice
updated 6.3 years ago by ★ 4.8k • written 6.5 years ago by ▴ 190
0
votes
1
reply
1.9k
views
Missing lots of SNP while clumping
PRSice
6.4 years ago by landscape95 ▴ 190
4
votes
4
replies
2.2k
views
Get SNP information with association test with PLINK
GWAS Plink
updated 6.4 years ago by 12k • written 6.4 years ago by ▴ 190
0
votes
0
replies
1.5k
views
Using SSrGE for SNV calling
SSrGE SNV
6.5 years ago by landscape95 ▴ 190
0
votes
3
replies
1.2k
views
Viewing large compressed genetic relationship matrix .grm file
GCTA
6.5 years ago by landscape95 ▴ 190
3
votes
2
replies
4.1k
views
Parallel in PLINK for linear association for SNP effects
GWAS Plink
updated 6.5 years ago by 11k • written 6.5 years ago by ▴ 190
1
vote
3
replies
5.6k
views
Missing data in covariate file in PLINK
GWAS
updated 6.5 years ago by 4.1k • written 6.5 years ago by ▴ 190
0
votes
0
replies
1.5k
views
GWAS Retrieve Target Sample from a whole set of samples and PRS in PRSice tool
GWAS Plink
6.5 years ago by landscape95 ▴ 190
1
vote
3
replies
3.0k
views
GWAS Make bed file from fam and bim and Polygenic Risk Score calculation
GWAS plink
updated 6.5 years ago by 12k • written 6.5 years ago by ▴ 190
0
votes
0
replies
974
views
Selecting TargetScan datatype
data
updated 6.6 years ago by 20 • written 6.6 years ago by ▴ 190
0
votes
1
reply
1.5k
views
TargetScan search for miR-10b-5p
data
6.6 years ago by landscape95 ▴ 190
0
votes
0
replies
1.7k
views
Data for comparison between control and treat samples (cells or patients) by single-cell RNA-Seq
scRNA-Seq
6.7 years ago by landscape95 ▴ 190
2
votes
1
reply
2.5k
views
RNA-Seq data from Firebrowse TCGA
RNA-Seq
6.7 years ago by landscape95 ▴ 190
1
vote
3
replies
2.7k
views
Combine microarray and RNA-seq gene expression for differentially expression analysis
RNA-Seq microarray DEG
updated 3.4 years ago by ▴ 30 • written 6.8 years ago by ▴ 190
24
votes
14
replies
56k
views
7 follow
Gene symbol convert to Entrez ID
Entrez R biomart
updated 6.9 years ago by 12k • written 8.1 years ago by ▴ 190
1
vote
1
reply
1.4k
views
Biomart package listFilter function with with_mirbase vs other mir information
R biomart
updated 6.9 years ago by ★ 2.1k • written 6.9 years ago by ▴ 190
0
votes
2
replies
1.8k
views
Download Gene Expression Data from UCSC
UCSC
updated 7.0 years ago by • 0 • written 7.1 years ago by ▴ 190
3
votes
4
replies
1.4k
views
Separate non-coding RNA from total RNA list
non-coding RNA
updated 7.1 years ago by 12k • written 7.1 years ago by ▴ 190
1
vote
1
reply
1.6k
views
Bedtools intersect with index
bedtools
updated 7.1 years ago by 36k • written 7.1 years ago by ▴ 190
4
votes
7
replies
2.7k
views
Data preprocessing with background correction and normalization
RNA-Seq
7.3 years ago by landscape95 ▴ 190
0
votes
3
replies
3.4k
views
Log2 vs Quantile normalization
normalization
7.3 years ago by landscape95 ▴ 190
1
vote
1
reply
1.5k
views
Quality control of gene expression data
QC
updated 7.3 years ago by 89k • written 7.3 years ago by ▴ 190
3
votes
2
replies
2.3k
views
Build regulatory network for miRNA-LncRNA
regulatory
updated 7.4 years ago by ▴ 80 • written 8.1 years ago by ▴ 190
1
vote
1
reply
2.3k
views
Error with getGEO from GEOquery package bioconductor
GEOquery
updated 7.7 years ago by 27k • written 7.7 years ago by ▴ 190
4
votes
7
replies
3.4k
views
GEO data preprocessing with fRMA, limma and sva packages
GEO
updated 7.9 years ago by ★ 1.4k • written 7.9 years ago by ▴ 190
1
vote
2
replies
1.4k
views
Probes - to - genes expression analysis question
Affymetrix
8.0 years ago by landscape95 ▴ 190
1
vote
2
replies
1.8k
views
Question on number of probes in CEL and SOFT from GEO
GEO
updated 8.0 years ago by ★ 1.2k • written 8.0 years ago by ▴ 190
0
votes
0
replies
1.1k
views
Compare between microarray data sets
microarray
8.0 years ago by landscape95 ▴ 190
0
votes
1
reply
1.7k
views
Map from GEO samples' name to TCGA name
mapping
updated 8.0 years ago by ▴ 330 • written 8.0 years ago by ▴ 190
0
votes
2
replies
1.8k
views
Get mRNA, miRNA, lncRNA specific for probes
GEO
updated 8.0 years ago by ▴ 330 • written 8.0 years ago by ▴ 190
1
vote
0
replies
2.0k
views
Getting lncRNA from TCGA (Breast cancer BRCA type)
lncRNA
8.0 years ago by landscape95 ▴ 190
3
votes
2
replies
4.5k
views
Clinical data from GEO
GEO
updated 8.0 years ago by 102k • written 8.0 years ago by ▴ 190
0
votes
1
reply
2.1k
views
Combine .CEL files from RAW GEO compressed file into 1 matrix
GEO
8.0 years ago by landscape95 ▴ 190
0
votes
1
reply
2.7k
views
Relapse-free Survival Analysis
Survival Analysis
8.1 years ago by landscape95 ▴ 190
1
vote
1
reply
1.9k
views
Survival Analysis for RNASeqV2 processed by PAM50 prediction subtype method
PAM50
updated 18 months ago by ★ 4.4k • written 8.1 years ago by ▴ 190
1
vote
2
replies
2.6k
views
Asking for books for bioinformatics book for beginner
book
updated 8.1 years ago by 152k • written 8.1 years ago by ▴ 190
1
vote
3
replies
2.5k
views
Translate from hsa-let- to MIMAT type
conversion
updated 2.2 years ago by 45k • written 8.1 years ago by ▴ 190
2
votes
4
replies
2.9k
views
TCGA barcode dictionary
barcode
updated 8.1 years ago by ▴ 310 • written 8.2 years ago by ▴ 190
2
votes
3
replies
5.3k
views
Normalize miRNA expression matrix from reads count table
miRNA
8.2 years ago by landscape95 ▴ 190
5
votes
8
replies
2.9k
views
Create gene expression matrix from miRNA
miRNA
updated 8.2 years ago by ★ 1.2k • written 8.2 years ago by ▴ 190
57 results • Page 1 of 2
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