User: vasanth.m.29

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Posts by vasanth.m.29

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Filtering the gene list using q-value instead if p-value
... Thank you very much. What do you mean by adjusting p-value or q-value. Does it mean using cut off. ...
written 6 months ago by vasanth.m.290
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Filtering the gene list using q-value instead if p-value
... I have obtained DEG lists from Tuxedo and Kallisto with genes 515396 and 747160 respectively. Can I filter these lists based on q-value instead of p-value as both pipelines used different methods to calculate p-value? ...
deglist rna-seq written 6 months ago by vasanth.m.290 • updated 6 months ago by Devon Ryan84k
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Comment: C: Remove background noise from DEG-list obtained from Tuxedo suite
... Such as false positive results. Please refer the following link. http://vinaykmittal.blogspot.com/2014/04/how-to-filter-out-background-noise-from.html ...
written 6 months ago by vasanth.m.290
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Remove background noise from DEG-list obtained from Tuxedo suite
... I ran my data using tuxedo suite pipeline and obtained the DEG list. I would like to remove the background noise. Kindly suggest any methods or references. ...
rna-seq written 6 months ago by vasanth.m.290
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Comment: C: PCA Tools to analyse RNA-seq data
... Can you please provide the link to Linux version of MeV. ...
written 10 months ago by vasanth.m.290
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PCA Tools to analyse RNA-seq data
... Hi, I have performed RNA-seq data analysis. pipeline TopHap > Cufflinks > Cuffcompare > Cuffdiff I would like to do PCA for the cuffdiff output data. Can anyone suggest any tool to do PCA that does not involve R packages and in Linux environment? Thanks. ...
pca rna-seq written 10 months ago by vasanth.m.290 • updated 5 months ago by Jennifer Pham190
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Comment: C: Why Ribo-seq not as popular as RNA-seq?
... Thank you Mr. Ryan, But, If we want to do a gene expression analysis wouldn't it be more sensible to do a Ribo-seq rather than a RNA-seq. ...
written 19 months ago by vasanth.m.290
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Why Ribo-seq not as popular as RNA-seq?
... Hi all, I would like to know the difference between the Ribo-seq and RNA-seq and why Ribo-seq is not as popular as RNA-seq. I know that in both the profiling techniques we sequence the mRNA, but in Ribo-seq we sequecne the only cDNA that is actively translated. ...
ribo-seq rna-seq written 19 months ago by vasanth.m.290 • updated 19 months ago by Devon Ryan84k
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meaning of steady-state mRNA
... I would like to know little details on steady-state mRNA. Kindly provide links for further details on it. ...
rna-seq written 19 months ago by vasanth.m.290 • updated 19 months ago by theobroma221.1k

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