User: enterid

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enterid10
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Posts by enterid

<prev • 13 results • page 1 of 2 • next >
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Tophat2 for size filter
... Hi , i am new to bioifnromatic i am working on some RNA seq result , i am using TopHat2 for the alignmnet to the ref genome , i was wondering do Tophat2 get function like size filter , i would like to filter those RNA read below 200nt Thanks ...
rna-seq written 12 months ago by enterid10 • updated 12 months ago by Devon Ryan78k
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Comment: C: Raw expression data is better for FPKM normalised expression profile in RNA seq
... alright , thank you ...
written 12 months ago by enterid10
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8 follow
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Raw expression data is better for FPKM normalised expression profile in RNA seq
... I am working on the Differential Expression Analysis on RNA-Seq Data between tumor sample and normal sample, while my lecturer suggest me better use the raw expression data instead of using FPKM as expression unit , anyone could tell me why ? or what is the advantage for this ? ...
rna-seq written 12 months ago by enterid10 • updated 6 weeks ago by swbarnes23.4k
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adv of RPKM for gene expression profile
... I am doing a research on long non coding RNA gene expression in lung cancer , when i was reading difference research paper, i do find that many of them are using RPKM as expression unit why they like to do this instead of using the raw expression data set ? ...
rna-seq written 13 months ago by enterid10 • updated 13 months ago by Arnaud Ceol820
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how to extract all the gene in chromosome X in bed file using R package (rtacklayer)
... I am working on a specific on RNA gene expression project , after prcoessing RNA seq , i get a bed file with all the gene expression , how can i select the all the gene in chromosome X using R package (rtacklayer). ...
R written 13 months ago by enterid10 • updated 13 months ago by Alex Reynolds23k
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Comment: C: Tool/how can i selecting lncRNA from microarray / RNA seq profile
... but there is nobody reply ...
written 14 months ago by enterid10
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(Closed) Tool/how can i selecting lncRNA from microarray / RNA seq profile
... i am going to comparing the lncRNA expression data from the tumor sample and my own clinical data , the tumor sample i am accessing are microarray profile/RNA seq from these 2 plant from: IlluminaHiSeq_RNASeqV2 and AgilentG4502A_07_3. However , i was wondering how i can filter out the known protein ...
microarray rna-seq written 14 months ago by enterid10
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Tool for selecting lncRNA from microarray / RNA seq
... I am going to comparing the lncRNA expression data from tumor sample and my own clicial data , the tumor sample i am acessing are microarray profile/RNA seq from these 2 platfrom: IlluminaHiSeq_RNASeqV2 and AgilentG4502A_07_3. However , i was wondering how i can filter out the known protein cod ...
rna-seq written 14 months ago by enterid10 • updated 13 months ago by Biostar ♦♦ 20
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how can i select lncRNA from Agilent RNA expression data
... I am very new to bioinformatics and so far belong to pure biological science domain. I have been analyzing differentially expressed genes between tumors and normals for long non coding RNA using Agilent G4502A_07 RNA gene expression data from TCGA. few questions below: 1. what is the differen ...
rna-seq lncrna written 14 months ago by enterid10
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Comment: C: Where can i download the lncRNA expression profile for Lung adenocarcinoma
... I was trying this , however , the file size is too big to me to download it without using a server ...
written 14 months ago by enterid10

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