User: amelie.rouger

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Posts by amelie.rouger

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Comment: C: Bio-statistics for metatranscriptomic
... Thank's for answering. Yes I used metagenome to map the RNA reads. I assembled metagenome with IDBA and annotated it with PROKKA. When I used available genome on ncbi to map the RNA reads I aligned only 30% of reads, that why we used metagenomes to map RNA reads. ...
written 2.6 years ago by amelie.rouger0
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Bio-statistics for metatranscriptomic
... Hi everybody, I am trying to identified differentially expressed (DE) genes of several bacterial metatranscriptomes. To sum up the experimental plan. We have 2 bacterial communities (named E and U) inoculated under 3 different conditions A, B and C (reference condition). I collected both DNA and RN ...
pathway stats rna-seq written 2.6 years ago by amelie.rouger0 • updated 2.5 years ago by Biostar ♦♦ 20

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