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questions
1
vote
2
replies
458
views
Multiple testing adjustment for stepwise model selection
statistics
7 months ago by
mel22
▴ 100
15
votes
13
replies
8.6k
views
7 follow
Phasing with SHAPEIT
SNP
impute
shapeit
plink
updated 2.2 years ago by
Anupriya Dalmia
• 0 • written 4.4 years ago by
mel22
▴ 100
0
votes
0
replies
398
views
Power calculation in Trio studies for de novo variants identification
WGS
2.4 years ago by
mel22
▴ 100
5
votes
7
replies
844
views
Merging same one column different files
merge
bash
updated 3.4 years ago by
Pierre Lindenbaum
161k • written 3.4 years ago by
mel22
▴ 100
2
votes
3
replies
884
views
Explore CNV data from illumina Array
SNP
CNV
Illumina
updated 3.4 years ago by
bernatgel
★ 3.4k • written 3.4 years ago by
mel22
▴ 100
5
votes
5
replies
1.2k
views
Transforming big file
SNP
updated 3.4 years ago by
bioinformatics2020
▴ 820 • written 3.4 years ago by
mel22
▴ 100
12
votes
12
replies
2.7k
views
Script bash to split columns
bash script split
updated 3.4 years ago by
Mensur Dlakic
★ 27k • written 3.4 years ago by
mel22
▴ 100
3
votes
4
replies
1.0k
views
CNV data from Illumina OncoArray Cheap analysis
SNPchip
gwas
CNV
3.4 years ago by
mel22
▴ 100
0
votes
0
replies
431
views
Local association plot with annotation data
SNP
genome
gene
written 3.5 years ago by
mel22
▴ 100
0
votes
0
replies
594
views
Simons Diversity Project
assembly
alignment
genome
3.6 years ago by
mel22
▴ 100
0
votes
2
replies
663
views
Refrence datasets for imputation
Imputation
SNP
3.6 years ago by
mel22
▴ 100
2
votes
3
replies
896
views
CrossMaps tool failure mapping
SNP
Grch37
Grch38
3.7 years ago by
mel22
▴ 100
2
votes
4
replies
2.7k
views
Imputation results from TOPMED server
SNP
imputation
TOPMED
3.7 years ago by
mel22
▴ 100
1
vote
2
replies
1.9k
views
Imputation output from TOPMED server
SNP
imputation
TOPMED
updated 3.8 years ago by
zx8754
11k • written 3.8 years ago by
mel22
▴ 100
2
votes
4
replies
988
views
Pathway and gene analysis based on GWAS results
SNP
pathways
GWAS
updated 3.8 years ago by
Sam
★ 4.7k • written 3.8 years ago by
mel22
▴ 100
1
vote
2
replies
2.8k
views
TopMed imputation server
imputation
rsID
QC
updated 3.8 years ago by
nleone
▴ 20 • written 3.9 years ago by
mel22
▴ 100
2
votes
2
replies
959
views
Overlapping SNPs between two arrays and genotyping choice
assembly
SNP
genome
updated 3.9 years ago by
Kevin Blighe
87k • written 3.9 years ago by
mel22
▴ 100
4
votes
5
replies
2.6k
views
updating SNP names in VCF file
SNP
RS names
VCF
updated 3.9 years ago by
Jimbou
▴ 950 • written 3.9 years ago by
mel22
▴ 100
0
votes
0
replies
591
views
PCs presentation on geographic map
SNP
MAP
PCA
updated 3.9 years ago by
ATpoint
82k • written 3.9 years ago by
mel22
▴ 100
2
votes
3
replies
976
views
imputation from WES data
sequencing
genome
4.0 years ago by
mel22
▴ 100
4
votes
6
replies
956
views
Interaction snp * environment strata
SNP
interaction
statistcs
updated 4.0 years ago by
Kevin Blighe
87k • written 4.0 years ago by
mel22
▴ 100
0
votes
0
replies
732
views
GxE Interaction : How to calculate genotype effect stratified per exposure
SNP
GxE
interaction
4.0 years ago by
mel22
▴ 100
2
votes
4
replies
647
views
Variants selection with Gene Ontology
snp
R
GO
4.0 years ago by
mel22
▴ 100
1
vote
3
replies
988
views
Haplotype association in case control studies
SNP
case-control
Beagle3
updated 4.2 years ago by
Kevin Blighe
87k • written 4.2 years ago by
mel22
▴ 100
6
votes
10
replies
917
views
Merging many files with having same columns with bash script
bash
updated 4.2 years ago by
Pierre Lindenbaum
161k • written 4.2 years ago by
mel22
▴ 100
3
votes
3
replies
1.0k
views
OR in plink2 GLM
SNP
plink
4.2 years ago by
mel22
▴ 100
1
vote
3
replies
770
views
Case control status permutation in GWAS
SNP
R
4.3 years ago by
mel22
▴ 100
9
votes
4
replies
639
views
Value extraction from large file with bash
SNP
updated 4.3 years ago by
Pierre Lindenbaum
161k • written 4.3 years ago by
mel22
▴ 100
0
votes
8
replies
1.3k
views
Reference allel error in ped to vcf conversion
SNP
updated 4.3 years ago by
Biostar
20 • written 4.3 years ago by
mel22
▴ 100
1
vote
2
replies
959
views
Annotating big VCF file hg38
SNP
Assembly
sequencing
updated 4.3 years ago by
ATpoint
82k • written 4.3 years ago by
mel22
▴ 100
4
votes
6
replies
1.2k
views
Splitting a big file according to the first colum value with bash
snp
4.4 years ago by
mel22
▴ 100
2
votes
1
reply
588
views
Imputation from multiple reference panels softwares
SNP
updated 4.4 years ago by
Kevin Blighe
87k • written 4.4 years ago by
mel22
▴ 100
10
votes
10
replies
1.0k
views
For loop parallelisation
R
4.4 years ago by
mel22
▴ 100
6
votes
7
replies
931
views
R loop and other languages
R
4.5 years ago by
mel22
▴ 100
2
votes
2
replies
1.2k
views
phenotype permutation in GWAS
R
snp
4.6 years ago by
mel22
▴ 100
4
votes
4
replies
789
views
Regression models on genetic data
R
SNP
updated 4.7 years ago by
Lemire
▴ 940 • written 4.7 years ago by
mel22
▴ 100
2
votes
4
replies
861
views
Meta analysis on 2 genotyping data set
SNP
R
4.7 years ago by
mel22
▴ 100
1
vote
3
replies
650
views
Trainng and validation set selection
R
case control genotyping
4.8 years ago by
mel22
▴ 100
0
votes
1
reply
622
views
Filter Variant in DNA repair genes
SNP
R
gene
4.9 years ago by
mel22
▴ 100
0
votes
0
replies
846
views
Haplotype association in case-control study with R
haplotype
R
case-control
snp
beagle
5.3 years ago by
mel22
▴ 100
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