User: melania 2282

gravatar for melania 2282
melania 228290
Reputation:
90
Status:
Trusted
Location:
Last seen:
1 day, 4 hours ago
Joined:
3 years, 8 months ago
Email:
m**********@gmail.com

Posts by melania 2282

<prev • 82 results • page 2 of 9 • next >
1
vote
0
answers
205
views
0
answers
Imputation output from TOPMED server
... Hello, As beginner and it's my first imputation, I have few questions about TOPMED imputation server please any one used to this type of imputation server could help : ) 1. The output of the imputation does it contain typed and untyped SNPs ? 2. If yes how to know the typed ones ? 3. When a f ...
imputation snp topmed written 3 months ago by melania 228290 • updated 3 months ago by zx87549.7k
0
votes
1
answer
140
views
1
answers
Comment: C: Pathway and gene analysis based on GWAS results
... Thank you very much Sam I will try this ...
written 3 months ago by melania 228290
2
votes
1
answer
140
views
1
answer
Pathway and gene analysis based on GWAS results
... Hello Do you have any advices about performing a pathway analysis or gene analyses based on GWAS results ? Is there any newer methods other than Vegas and Magenta (based on Grch37) because my data is Grch38. Thank you very much ...
pathways snp gwas written 3 months ago by melania 228290 • updated 3 months ago by Sam3.2k
0
votes
1
answer
420
views
1
answers
Comment: C: TopMed imputation server
... Thank you very much Dominick, I willl check this. ...
written 4 months ago by melania 228290
1
vote
1
answer
173
views
1
answers
Comment: C: Overlapping SNPs between two arrays and genotyping choice
... Thank you very much Kevin, very useful link ! Yes I think I will impute both of theme separately , I think it's the best solution. ...
written 4 months ago by melania 228290
1
vote
1
answer
420
views
1
answer
TopMed imputation server
... Hello, I imputed my data with TopMed imputation server, and now I have 3 problems 1- I have no more rs ID, all variants are chrXX:00000000 format. How can I resolve this, I am working on vcf and plink files 2- If I allply an r² threshold, could I keep the physically genotyped variants or it wi ...
imputation qc rsid written 4 months ago by melania 228290 • updated 4 months ago by nleone10
2
votes
1
answer
173
views
1
answer
Overlapping SNPs between two arrays and genotyping choice
... Hello, I have genotyping data from Illumina array (460000 SNP) . I will add data from another study but I have only one choice of array : Axium Precision medicine (ThermoFisher, 900000 SNP). The overlopping SNPs between the two arrays are less than 10 % of Illumina (about 40 000 SNPs). Imputing th ...
genome assembly snp written 4 months ago by melania 228290 • updated 4 months ago by Kevin Blighe66k
0
votes
2
answers
201
views
2
answers
Comment: C: updating SNP names in VCF file
... Thank you very much ...
written 4 months ago by melania 228290
0
votes
2
answers
201
views
2
answers
Comment: C: updating SNP names in VCF file
... Thank you very much ...
written 4 months ago by melania 228290
4
votes
2
answers
201
views
2
answers
updating SNP names in VCF file
... Hello How can I update SNP names from position (chr1:xxxxxx) to rs name in VCF file ? I have a reference VCF file with rs names and want to update my own data VCF file. Thanks for your help ...
vcf snp rs names written 4 months ago by melania 228290 • updated 4 months ago by Jimbou770

Latest awards to melania 2282

Popular Question 4 weeks ago, created a question with more than 1,000 views. For Phasing with SHAPEIT
Supporter 10 months ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1533 users visited in the last hour