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25
votes
9
replies
17k
views
9 follow
.mcool to .hic
RNA-Seq
updated 22 months ago by ▴ 50 • written 6.4 years ago by ▴ 210
0
votes
1
reply
860
views
Running htseq-count to "grab" long non coding gene_id names
lncRNA htseq
updated 3.8 years ago by 151k • written 3.8 years ago by ▴ 210
0
votes
0
replies
696
views
Merging Output from Trinity and Go analysis
transcriptome merge assembly
4.2 years ago by dimitrischat ▴ 210
16
votes
10
replies
8.0k
views
from txt to bed
ChIP-Seq
updated 4.3 years ago by 20 • written 8.2 years ago by ▴ 210
0
votes
1
reply
1.3k
views
Solanum lycopersicum gff htseq-count
RNA-Seq
4.6 years ago by dimitrischat ▴ 210
10
votes
18
replies
6.2k
views
Restricting database by taxa in local blast searches
RNA-Seq
updated 4.7 years ago by • 0 • written 5.4 years ago by ▴ 210
7
votes
12
replies
2.4k
views
sorting a csv file with 3 columns
next-gen
updated 4.7 years ago by 14k • written 4.7 years ago by ▴ 210
6
votes
10
replies
1.9k
views
ggplot stacked barchart help
RNA-Seq
updated 4.8 years ago by ★ 1.9k • written 4.8 years ago by ▴ 210
3
votes
7
replies
1.4k
views
tree with selected species
alignment
4.9 years ago by dimitrischat ▴ 210
0
votes
0
replies
655
views
DNA Conservation Graph/Score
ChIP-Seq
4.9 years ago by dimitrischat ▴ 210
7
votes
14
replies
2.4k
views
How to Blast with multiple species - Phylogenetic Analysis
ChIP-Seq alignment sequence
5.1 years ago by dimitrischat ▴ 210
0
votes
2
replies
1.7k
views
Help for OmicsBox - Blast2GO
RNA-Seq
5.1 years ago by dimitrischat ▴ 210
0
votes
0
replies
718
views
After KEGG and GO analysis, how to make tables+phylogenetic trees
RNA-Seq Assembly assembly
5.2 years ago by dimitrischat ▴ 210
1
vote
6
replies
1.1k
views
Phylogenetics analysis between diverse species
sequencing genome
5.2 years ago by dimitrischat ▴ 210
0
votes
1
reply
862
views
from blastp uniprot to amino acid sequences fasta
RNA-Seq Assembly
5.2 years ago by dimitrischat ▴ 210
4
votes
19
replies
2.9k
views
RNA de novo assembly - blasts - KEGG - GO
RNA-Seq Assembly
updated 5.2 years ago by ▴ 200 • written 5.2 years ago by ▴ 210
0
votes
1
reply
2.0k
views
Trinity transcript_abundance.pl error using RSEM
Assembly RNA-Seq
updated 2.8 years ago by ▴ 20 • written 5.3 years ago by ▴ 210
1
vote
4
replies
2.7k
views
hmmscan using Pfam databases
RNA-Seq
5.3 years ago by dimitrischat ▴ 210
0
votes
1
reply
2.3k
views
De novo transcriptome assembly, annotation, blast using Trinity, transdecoder and blast
RNA-Seq Assembly
updated 5.4 years ago by 35k • written 5.4 years ago by ▴ 210
0
votes
0
replies
670
views
Clustering intervals of a dataset
ChIP-Seq
5.5 years ago by dimitrischat ▴ 210
1
vote
3
replies
1.1k
views
ggplot2 problem many variables
ChIP-Seq
updated 5.7 years ago by 45k • written 5.7 years ago by ▴ 210
0
votes
8
replies
1.6k
views
Making phylogenetic trees
alignment phylogenetic tree
updated 5.9 years ago by ★ 2.2k • written 5.9 years ago by ▴ 210
0
votes
0
replies
1.8k
views
GOplot GOcluster plots
RNA-Seq
6.1 years ago by dimitrischat ▴ 210
3
votes
2
replies
1.4k
views
hicexplorer hicPlotTADs configuration file
ChIP-Seq
updated 6.2 years ago by 20 • written 6.2 years ago by ▴ 210
0
votes
1
reply
3.2k
views
GOplot - tutorial
RNA-Seq
6.2 years ago by dimitrischat ▴ 210
4
votes
7
replies
5.8k
views
STAR fusion error
RNA-Seq
6.3 years ago by dimitrischat ▴ 210
1
vote
1
reply
1.6k
views
tophat fusion error
RNA-Seq
6.3 years ago by dimitrischat ▴ 210
1
vote
2
replies
1.3k
views
Finding fusion genes
RNA-Seq
updated 6.3 years ago by 4.1k • written 6.3 years ago by ▴ 210
9
votes
9
replies
11k
views
remove duplicates with markdup
RNA-Seq samtools
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 210
0
votes
3
replies
1.5k
views
Hi-c pro error in installation process
ChIP-Seq
6.3 years ago by dimitrischat ▴ 210
4
votes
1
reply
2.1k
views
juicer.sh problem !
RNA-Seq
updated 6.3 years ago by 20 • written 6.4 years ago by ▴ 210
4
votes
6
replies
5.7k
views
how to install Juicer hi-c
ChIP-Seq
6.4 years ago by dimitrischat ▴ 210
0
votes
4
replies
1.1k
views
Chrom3d Bead color
ChIP-Seq
6.6 years ago by dimitrischat ▴ 210
8
votes
5
replies
20k
views
Deseq2 Shrinkage or no?
RNA-Seq
updated 6.7 years ago by 9.0k • written 6.7 years ago by ▴ 210
6
votes
12
replies
7.1k
views
Merging Peaks from macs2
ChIP-Seq
updated 6.8 years ago by 45k • written 6.8 years ago by ▴ 210
5
votes
6
replies
3.0k
views
Using Diffbind R-studio
ChIP-Seq
updated 6.8 years ago by 105k • written 6.8 years ago by ▴ 210
2
votes
5
replies
2.7k
views
gff file of constituent enhancer For Young algorithm
assembly
updated 6.9 years ago by 20 • written 7.0 years ago by ▴ 210
8
votes
16
replies
7.7k
views
Editing Bed file
ChIP-Seq bed alignment sequence
updated 7.0 years ago by ▴ 10 • written 8.3 years ago by ▴ 210
3
votes
2
replies
1.5k
views
rna seq - deseq2
RNA-Seq
updated 7.5 years ago by 20 • written 7.6 years ago by ▴ 210
0
votes
1
reply
1.5k
views
ftp server usegalaxy filezilla problem
software error
updated 7.6 years ago by 105k • written 7.6 years ago by ▴ 210
16
votes
17
replies
4.0k
views
6 follow
RNA seq pipeline
RNA-Seq
7.6 years ago by dimitrischat ▴ 210
0
votes
1
reply
1.8k
views
tophat2 bowtie2index error
RNA-Seq
updated 7.7 years ago by 151k • written 7.7 years ago by ▴ 210
2
votes
4
replies
1.8k
views
input of cummerbund
RNA-Seq
updated 7.9 years ago by ★ 1.1k • written 7.9 years ago by ▴ 210
0
votes
2
replies
1.9k
views
cuffmerge no such file or directory
RNA-Seq
updated 7.9 years ago by 48k • written 7.9 years ago by ▴ 210
8
votes
5
replies
1.4k
views
tophat 2 rna seq
RNA-Seq
updated 8.0 years ago by ▴ 20 • written 8.1 years ago by ▴ 210
1
vote
1
reply
1.3k
views
cuffdiff / htseq-count
RNA-Seq
updated 8.0 years ago by 105k • written 8.0 years ago by ▴ 210
2
votes
0
replies
1.3k
views
problem running cufdiff
RNA-Seq
8.1 years ago by dimitrischat ▴ 210
1
vote
4
replies
4.2k
views
cufflinks/cuffdiff command line
RNA-Seq
updated 8.1 years ago by 45k • written 8.1 years ago by ▴ 210
5
votes
7
replies
2.0k
views
Reduce/Select reads/lines ffrom files using terminal
RNA-Seq ChIP-Seq sequence
updated 8.1 years ago by 20k • written 8.1 years ago by ▴ 210
1
vote
4
replies
1.9k
views
rna-seq alignment and calculate + compare expression levels
RNA-Seq
updated 8.1 years ago by ▴ 210 • written 8.1 years ago by ▴ 210
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