User: ncrouc2

gravatar for ncrouc2
ncrouc220
Reputation:
20
Status:
New User
Location:
Last seen:
2 years, 2 months ago
Joined:
2 years, 3 months ago
Email:
n******@uic.edu

Posts by ncrouc2

<prev • 4 results • page 1 of 1 • next >
1
vote
1
answer
904
views
1
answers
Answer: A: Defining populations in PopGenome after running readMS
... I have found the solution. The `get.individuals` function provides a list of names of the sequences. In this instance, it was `"1", "2", "3", "4", "5", "6"`. To get the example above to work is, therefore: `pop.1 <- c("1", "2")` `pop.2 <- c("3", "4")` `pop.3 <- c("5", "6")` `x <- set ...
written 2.2 years ago by ncrouc220
0
votes
1
answer
904
views
1
answers
Comment: C: Defining populations in PopGenome after running readMS
... So far I have just followed the example in the [documentation][1] and tinkered without success [1]: https://www.rdocumentation.org/packages/PopGenome/versions/2.1.6/topics/set.populations-methods ...
written 2.2 years ago by ncrouc220
0
votes
1
answer
904
views
1
answers
Comment: C: Defining populations in PopGenome after running readMS
... Running the code as above doesn't throw errors, but when I try to perform additional steps, e.g. `neutrality.stats(x)`, then I get `Error in populations[[xx]] : subscript out of bounds`. `x` here is class `GENOME` and has 110 slots corresponding to different statistics about the data. ...
written 2.2 years ago by ncrouc220
2
votes
1
answer
904
views
1
answer
Defining populations in PopGenome after running readMS
... Hi, I am running simulations in `ms` and then (wanting to) analyze the output using `PopGenome` in `R`, however I am having trouble defining the different populations when I load the data. For example, say I run the following command line: `./ms 6 1 -t 6 -I 3 2 2 2 -ej 1 3 2 -ej 2 2 1 > test_ou ...
R popgenome ms written 2.2 years ago by ncrouc220

Latest awards to ncrouc2

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1940 users visited in the last hour