User: hivemind

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hivemind10
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Posts by hivemind

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Orthoinspector OrthoXML mapping
... Hello everyone, I am currently working on a program to extract orthology data of Orthoinspector OrthoXML files. The problem for me is that I don't know which species is compared to the other species (I can't determine the base organism). The files seem to have all the same number of species entri ...
orthoxml orthoinspector orthology mapping written 3 days ago by hivemind10
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Answer: A: Parse hmm(er) profiles in R
... Hi, thanks for the replies. I think I have to clarify my request: I am not trying to parse/load the results of hmmsearch (this should be no problem using SearchIO in Python). I want to load the hmmbuild model. Basically the values for the match-states, insertion-states and the transition-probabilit ...
written 8 weeks ago by hivemind10
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Parse hmm(er) profiles in R
... Hello everyone, I am currently working with HMMER3 and created a bunch of profiles which I now want to use for another project. The problem is, that I want to write the code for my project in R and can't find a method to load the profiles. Does anybody know a method or package to get the model out ...
hmmer profile parse hmm R written 9 weeks ago by hivemind10

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