User: thyagoleal
thyagoleal • 0
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Posts by thyagoleal
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Comment:
C: Heatmap before and after RUVSeq
... I know it's late, but if anyone needs in future: you can use `limma::removeBatchEffect()` function from limma R package on your normalized log counts (you can use `edgeR::cpm()` for this using the log = TRUE). Please read those functions documentations. ...
written 8 months ago by
thyagoleal • 0
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... How did you solve your problem? Thanks! ...
written 3.7 years ago by
thyagoleal • 0
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... Hey there, I fixed it by editing the .ndf file and replacing some probe mismatch values from > 10000 to 0. Now, I'll filter those out, before analysis. ...
written 3.7 years ago by
thyagoleal • 0
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... Hello, everyone.
I'm trying to create an annotation package to use with Oligo in analysis. I had provided the .xys file and a .ndf file as requested and I received the following error:
Building annotation package for Nimblegen Expression Array
NDF: GPL10191_090828_HG18.ndf
XYS: GSM597 ...
written 3.7 years ago by
thyagoleal • 0
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... everyone.
I'm analyzing a two-channel microarray following an example from Bioconductor Case Studies book. I'm stuck in this error:
invalid class “NChannelSet” object: featureNames differ between assayData and featureData
Does anyone know how to fix it?
The line that resulted in the error is:
...
written 3.8 years ago by
thyagoleal • 0
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22 months ago,
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For invalid class NChannelSet object: featureNames differ between assayData and featureData
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