User: Inés Sentís

gravatar for Inés Sentís
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Posts by Inés Sentís

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Lowercase variants reported by SomaticSniper
... Hi! First of all, sorry if this is a very naive question but I could not find the answer in the [user's manual of SomaticSniper ][1]. Question: why there are some reported variants in the VCF output of SomaticSniper in lowercase? What does that mean? #CHROM POS ID REF ALT QUAL FILTER INFO ...
somaticsniper variantcalling written 8 weeks ago by Inés Sentís10 • updated 8 weeks ago by Pierre Lindenbaum98k
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Best CNV calling software for NGS and array data with posterior clonality analysis
... Dear all! I 've WXS and WGS sequencing data and I would like to make somatic mutation calling and copy number calling. For the first one, I think I would use Strelka or MuTect2 but I've my doubts about how to obtain the copy number calls. Bearing in mind that, among other things, I would like to ru ...
genome ngs clonality copy number calling written 7 months ago by Inés Sentís10

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