User: sinumolg

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sinumolg10
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7 months, 1 week ago
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1 year, 9 months ago
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s*******@rgcb.res.in

Posts by sinumolg

<prev • 15 results • page 1 of 2 • next >
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Tophat alignment error
... Hi I am doing RNA seq analysis of two bacterial strains. When running tophat for one file it shows the following error. "qual length (30) differs from seq length (81) for fastq record SRR3194957.20971384.2!" Can anybody help us to fix it out Thanks in advance ...
software error next-gen alignment chip-seq rna-seq written 9 months ago by sinumolg10
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Phylip consensus tree using single command
... I want to draw consensus tree for multiple input files. I am using Phylip package 3.695. By using this it is taking only one input file at a time from user. Is there any other way to do it for multiple input files using any other commands Thanks in advance ...
R next-gen sequence rna-seq alignment written 9 months ago by sinumolg10 • updated 9 months ago by h.mon22k
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Multiple fasta sequence query in a single file doing commandline blast
... I am doing standalone protein blast 2.6 I have a single query file contains 1000 s of fasta sequence and I want to blast it against the database. Is it possible in command line ? I am using this code but it seems stuck blastp -query ZJ5499.txt -db Z172.db -outfmt 7 -word_size 6 -out new_out ...
genome next-gen rna-seq blast sequencing written 20 months ago by sinumolg10 • updated 20 months ago by Buffo1.2k
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Customized Rearrangement of the columns in excel using perl script
... Hi I have an excel containing 1000 s of columns. I have to rearrange the columns into a different order. The new order is in a text file , according to that order i want to generate a new output file for eg: A B C D ......... i want to rearrange this like C A D B Please help me . T ...
R next-gen rna-seq blast sequencing written 20 months ago by sinumolg10 • updated 20 months ago by shenwei3564.3k
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How can we find the 16S rRNA sequence of an organism from NCBI?
... Hi All I want to get the 16srRNA sequence of Staphylococcus aureus to do phylogeny along with other similar strains. Can anyone please help me to get the data? Is it available in NCBI or any other sources? ...
genome gene next-gen rna-seq blast written 20 months ago by sinumolg10 • updated 18 months ago by Charles Warden5.8k
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Comment: C: else condition in awk
... thanks but its not working fine ...
written 21 months ago by sinumolg10
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Comment: C: else condition in bash
... Hi i tried this too. while doing then the error is like -bash: syntax error near unexpected token `else' ...
written 21 months ago by sinumolg10
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else condition in awk
... Hi , I am trying to print the output of a set of 100 input files I want to generate two files 1. satisfying if condition 2. satisfying else condition I am working in Bash . pls help me to solve this for i in *.txt; do awk '{if(($NF>70) && ($3>30)) {print $1,$2,$3,$NF'} $i > ...
R next-gen rna-seq blast sequencing written 21 months ago by sinumolg10 • updated 21 months ago by Rohit1.3k
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To do blastp iteratively using terminal script
... I have one input file containing 200 fasta query sequence. I want to do standalone blast for each fasta sequence separately . I am expecting my outfile of blast should be named its corresponding query fasta header name. How to do it using linux terminal scripts? Can anyone help me ...
sequence R next-gen blast written 21 months ago by sinumolg10 • updated 21 months ago by Pierre Lindenbaum115k
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BINC Exam question paper
... Does anyone have BINC previous year question paper? Bioinformatics National Level certification exam ...
genome alignment blast rna-seq written 21 months ago by sinumolg10 • updated 21 months ago by BioGeek130

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