User: User43533445

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Posts by User43533445

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RMA with Affymetrix Expression Console vs Oligo package
... I have 192 .CEL files (chip: Affymetrix Human Clariom S HT ). If I apply the RMA using Affymetrix Expression Console software (Analysis: Gene Level - SST-RMA) or with the rma() function from the Oligo package in R Bioconductor, I get quite different results. In general, the log2 expression values I ...
rma oligo microarray expression console written 2.1 years ago by User435334450 • updated 4 months ago by Kevin Blighe39k
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Outliers in microarray dataset - Possible explanation?
... Dear all, I am new to microarray analysis and I have a question regarding some of my samples. I have 192 samples collected from 15 human subjects at several time points, which were analyzed on Affymetrix Clariom chips. I used the function rma() in R to normalize the samples and subsequently looked ...
pca outliers microarray written 2.1 years ago by User435334450

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