User: phosphodiester_bond

Reputation:
0
Status:
New User
Last seen:
2 days, 23 hours ago
Joined:
7 months, 4 weeks ago
Email:
i*******@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by phosphodiester_bond

<prev • 5 results • page 1 of 1 • next >
0
votes
7
answers
43k
views
7
answers
Comment: C: How To Get The Sequence Of A Genomic Region From Ucsc?
... Thanks, this is really handy!! ...
written 7 days ago by phosphodiester_bond0
0
votes
0
answers
287
views
0
answers
Comment: C: liftOver narrowPeak file
... Just curious if you've ever figured this out. I'm wondering the same for GRCh38-mapped narrowPeak files to hg19. I suspect getting rid of the offending columns is not advisable. ...
written 3 months ago by phosphodiester_bond0
0
votes
2
answers
530
views
2
answers
Answer: A: error in macs2 usage
... BTW, looks like a bug but I'm waiting on the author to confirm. I didn't see where that variable is used anywhere else, so I just changed that line cited in the error message to hardcode the temp directory in my cluster: `tempfile.tempdir = '/tmp/'` Maybe this was intended to have a `--tempdir` ar ...
written 5 months ago by phosphodiester_bond0
0
votes
2
answers
530
views
2
answers
Answer: A: error in macs2 usage
... Have you figured this one out, Sara? I'm running into the exact same issue (using build 2.1.1.20160309). My command looks like: macs2 callpeak --nomodel --format SAM -t /path/to/somefile.sam --shift -100 --extsize 200 -B --broad --outdir /the/output/dir/ I've also tried without `--outdir`, but ...
written 5 months ago by phosphodiester_bond0
0
votes
3
answers
2.4k
views
3
answers
Comment: C: What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
... I'm also suspicious of these instructions in their pipeline since the "--strata" and "-k 1" options are incompatible. Not sure if we should ditch "--strata" or use a higher value for "-k" in case of overlaps. What do *you* guys normally use to align ATAC-Seq data? ...
written 7 months ago by phosphodiester_bond0

Latest awards to phosphodiester_bond

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1585 users visited in the last hour