User: maxwhjohn1988

Reputation:
0
Status:
New User
Last seen:
1 day, 16 hours ago
Joined:
6 months ago
Email:
m************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by maxwhjohn1988

<prev • 5 results • page 1 of 1 • next >
0
votes
1
answer
144
views
1
answers
Comment: C: Discovar De Novo assembly - "Attempt to allocate memory failed"
... Hi again, Yes, sorry for not being more clear about that. No, I didn't get a histogram out of BBNorm, just the normalised fastq files. I'll set that running now. Thanks again for helping with this, it's good to have experience minds looking at the problem. ...
written 5 days ago by maxwhjohn19880
0
votes
1
answer
144
views
1
answers
Comment: C: Discovar De Novo assembly - "Attempt to allocate memory failed"
... Hi genomax Thanks for replying again so quickly! Normalising them both together is not an option - the reason I've got two samples is because, although they are from the same species, I'm looking for a genomic signature associated with different phenotype. Assuming that BBNorming them both togeth ...
written 5 days ago by maxwhjohn19880
0
votes
1
answer
144
views
1
answers
Comment: C: Discovar De Novo assembly - "Attempt to allocate memory failed"
... An update - As I said above, I followed genomax's advice and ran BBNorm, which created read files which I successfully assembled. However, I have another dataset - the same organism, the same library prep, the same sequencing (they were sequenced in the same lane on the same sequencer!) I didn't ...
written 5 days ago by maxwhjohn19880
0
votes
1
answer
144
views
1
answers
Comment: C: Discovar De Novo assembly - "Attempt to allocate memory failed"
... Hi genomax, Thanks very much for your reply. Discovar DeNovo has been successfully run with other data, so I know it's not a case of it not working properly in the first place. IT services here assured me that I was getting a whole node to myself with the scheduler options I'd supplied - I'd requ ...
written 6 days ago by maxwhjohn19880
0
votes
1
answer
144
views
1
answer
Discovar De Novo assembly - "Attempt to allocate memory failed"
... As the title says, Discovar De Novo (52488 - I think this is some version identifier) keeps saying that it can't allocate memory - it then reliably aborts. This is driving me up the wall because I'm queueing often for days for access to a 1 Tb compute node on the HPC. **The details of my sequenci ...
software error assembly next-gen genome written 10 days ago by maxwhjohn19880

Latest awards to maxwhjohn1988

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 678 users visited in the last hour