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Comment: Comment: Addressing two nuisance factors in RNAseq
1 day ago by jkim ▴ 190
4
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4
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222
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Addressing two nuisance factors in RNAseq
bulkRNAseq
updated 11 hours ago by 87k • written 1 day ago by ▴ 190
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2.6k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
6 months ago by jkim ▴ 190
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1
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2.6k
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Comment: Comment: DESEQ with time series data on mutant vs. wild-type?
6 months ago by jkim ▴ 190
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1
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741
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Comment: Comment: RNA seq data for normal samples
8 months ago by jkim ▴ 190
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0
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809
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Comment: Comment: PCA plot
12 months ago by jkim ▴ 190
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0
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1.6k
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Comment: Comment: PCA plot (Suggestions Needed)
12 months ago by jkim ▴ 190
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0
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928
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Comment: Comment: Error during demultiplexing by bcl2fastq
12 months ago by jkim ▴ 190
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1
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1.5k
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Comment: Comment: 99.9999% of Q30 bases is normal?
12 months ago by jkim ▴ 190
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1
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1.5k
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Comment: Comment: 99.9999% of Q30 bases is normal?
12 months ago by jkim ▴ 190
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0
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1.2k
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Comment: Comment: create a gene count matrix csv file from seurat object
12 months ago by jkim ▴ 190
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1
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1.2k
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Comment: Comment: create a gene count matrix csv file from seurat object
12 months ago by jkim ▴ 190
0
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1
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1.2k
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Comment: Comment: create a gene count matrix csv file from seurat object
12 months ago by jkim ▴ 190
2
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6
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1.2k
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create a gene count matrix csv file from seurat object
Seurat sparseMatrix
12 months ago by jkim ▴ 190
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1
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1.2k
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
15 months ago by jkim ▴ 190
1
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1
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2.3k
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Comment: Comment: bcl2fastq troubleshooting all reads dumped to "Undetermined"
16 months ago by jkim ▴ 190
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0
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413
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% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
16 months ago by jkim ▴ 190
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0
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2.4k
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Comment: Comment: Nextflow bwa-mem2 pipeline/channel question
17 months ago by jkim ▴ 190
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2
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2.1k
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Comment: Comment: Mentor for a beginner bioinformatics student
18 months ago by jkim ▴ 190
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0
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1.5k
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Comment: Comment: Merge fastq files across different lanes in Nextflow
18 months ago by jkim ▴ 190
3
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3
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1.5k
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Merge fastq files across different lanes in Nextflow
Nextflow Fastq
18 months ago by jkim ▴ 190
1
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0
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1.5k
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Answer: Answer: Merge fastq files across different lanes in Nextflow
18 months ago by jkim ▴ 190
0
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0
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2.1k
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Comment: Comment: STAR index not working
19 months ago by jkim ▴ 190
0
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1
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950
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
19 months ago by jkim ▴ 190
4
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3
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950
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Batch effect consideration (re-seq the same sample twice)
RNA-seq batch-effect
updated 19 months ago by 45k • written 19 months ago by ▴ 190
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1.3k
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Comment: Comment: One sample has quite different # of reads from different lanes.
20 months ago by jkim ▴ 190
0
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1
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1.3k
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Comment: Comment: One sample has quite different # of reads from different lanes.
20 months ago by jkim ▴ 190
4
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4
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1.3k
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One sample has quite different # of reads from different lanes.
demultiplexing illumina fastq
20 months ago by jkim ▴ 190
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0
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1.7k
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Comment: Comment: Double biological replication when using DESeq2
21 months ago by jkim ▴ 190
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0
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1.1k
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Comment: Comment: How to interpret RNAseq output?
22 months ago by jkim ▴ 190
1
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0
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934
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Comment: Comment: mRNA library preparation Adapter ligation
23 months ago by jkim ▴ 190
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0
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1.7k
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Comment: Comment: How to trim reads for Chip Seq analysis
23 months ago by jkim ▴ 190
0
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0
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950
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Answer: Answer: What is the best aligner for stranded RNASeq
23 months ago by jkim ▴ 190
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1
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2.6k
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Comment: Comment: trimmomatic on scRNA seq data
24 months ago by jkim ▴ 190
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0
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2.3k
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Comment: Comment: Comparing two RNA-Seq datasets
2.6 years ago by jkim ▴ 190
0
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1
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2.3k
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Answer: Answer: Comparing two RNA-Seq datasets
2.6 years ago by jkim ▴ 190
1
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1
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1.2k
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Comment: Comment: DE analysis with multiple factors
2.6 years ago by jkim ▴ 190
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1
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1.8k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
2.6 years ago by jkim ▴ 190
0
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1
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1.8k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
2.6 years ago by jkim ▴ 190
3
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5
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1.8k
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Snakemake + singularity fails to locate bwa index files.
singularity snakemake bwa
updated 2.6 years ago by 23k • written 2.6 years ago by ▴ 190
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2.8k
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Comment: Comment: Read coverage shows a difference in IGV
2.7 years ago by jkim ▴ 190
0
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0
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2.8k
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Comment: Comment: Read coverage shows a difference in IGV
2.7 years ago by jkim ▴ 190
0
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0
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2.8k
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Comment: Comment: Read coverage shows a difference in IGV
2.7 years ago by jkim ▴ 190
0
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0
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2.8k
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Comment: Comment: Read coverage shows a difference in IGV
2.7 years ago by jkim ▴ 190
3
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7
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2.8k
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Read coverage shows a difference in IGV
coverage BAM
2.7 years ago by jkim ▴ 190
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0
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6.7k
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Comment: Comment: Is there a limit for SAMTOOLS tview option?
2.7 years ago by jkim ▴ 190
0
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0
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2.2k
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Comment: Comment: Filter out reads with hidden tags in bam files
2.7 years ago by jkim ▴ 190
0
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0
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2.2k
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Comment: Comment: Filter out reads with hidden tags in bam files
2.7 years ago by jkim ▴ 190
0
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0
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2.2k
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Comment: Comment: Filter out reads with hidden tags in bam files
2.7 years ago by jkim ▴ 190
4
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7
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2.2k
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Filter out reads with hidden tags in bam files
BAM samtools
2.7 years ago by jkim ▴ 190
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