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Comment: Comment: mRNA library preparation Adapter ligation
29 days ago by jkim ▴ 140
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349
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Comment: Comment: How to trim reads for Chip Seq analysis
4 weeks ago by jkim ▴ 140
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237
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Answer: Answer: What is the best aligner for stranded RNASeq
4 weeks ago by jkim ▴ 140
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1
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498
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Comment: Comment: trimmomatic on scRNA seq data
5 weeks ago by jkim ▴ 140
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1.2k
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Answer: Answer: DESeq2 design formula considerations
7 months ago by jkim ▴ 140
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0
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782
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Comment: Comment: Comparing two RNA-Seq datasets
8 months ago by jkim ▴ 140
0
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1
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782
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Answer: Answer: Comparing two RNA-Seq datasets
8 months ago by jkim ▴ 140
1
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1
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449
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Comment: Comment: DE analysis with multiple factors
8 months ago by jkim ▴ 140
0
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1
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830
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
9 months ago by jkim ▴ 140
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1
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830
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
9 months ago by jkim ▴ 140
3
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5
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830
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Snakemake + singularity fails to locate bwa index files.
singularity snakemake bwa
updated 8 months ago by 21k • written 9 months ago by ▴ 140
0
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720
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Comment: Comment: Read coverage shows a difference in IGV
9 months ago by jkim ▴ 140
0
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0
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720
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Comment: Comment: Read coverage shows a difference in IGV
9 months ago by jkim ▴ 140
0
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0
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720
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Comment: Comment: Read coverage shows a difference in IGV
9 months ago by jkim ▴ 140
0
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0
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720
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Comment: Comment: Read coverage shows a difference in IGV
9 months ago by jkim ▴ 140
3
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7
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720
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Read coverage shows a difference in IGV
coverage BAM
9 months ago by jkim ▴ 140
0
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0
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4.4k
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Comment: Comment: Is there a limit for SAMTOOLS tview option?
9 months ago by jkim ▴ 140
0
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0
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804
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Comment: Comment: Filter out reads with hidden tags in bam files
9 months ago by jkim ▴ 140
0
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0
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804
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Comment: Comment: Filter out reads with hidden tags in bam files
9 months ago by jkim ▴ 140
0
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0
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804
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Comment: Comment: Filter out reads with hidden tags in bam files
9 months ago by jkim ▴ 140
4
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7
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804
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Filter out reads with hidden tags in bam files
BAM samtools
9 months ago by jkim ▴ 140
0
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1
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804
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Answer: Answer: Filter out reads with hidden tags in bam files
9 months ago by jkim ▴ 140
0
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0
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635
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Answer: Answer: Counts from STAR with stranded protocol
12 months ago by jkim ▴ 140
0
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1
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954
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Comment: Comment: snakemake workflow
13 months ago by jkim ▴ 140
0
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0
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1.1k
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Comment: Comment: Biopython first project help
14 months ago by jkim ▴ 140
0
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1
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1.1k
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Comment: Comment: Biopython first project help
14 months ago by jkim ▴ 140
0
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1
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1.1k
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Comment: Comment: BLASTn produces empty output + output is 'Killed'
16 months ago by jkim ▴ 140
1
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0
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1.0k
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Comment: Comment: How to rename multiple files?
16 months ago by jkim ▴ 140
0
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0
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590
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Answer: Answer: Rename fasta file based on coordinates
16 months ago by jkim ▴ 140
0
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1
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593
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Comment: Comment: Sickle is giving empty trimmed file
16 months ago by jkim ▴ 140
0
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0
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1.8k
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Answer: Answer: Fastest way to parse through a fasta file in python
16 months ago by jkim ▴ 140
2
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0
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2.2k
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Answer: Answer: How to convert FASTQ to FASTA
17 months ago by jkim ▴ 140
2
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0
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641
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Answer: Answer: Basename the contents of a file
17 months ago by jkim ▴ 140
0
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0
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3.2k
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Comment: Comment: Differential Gene Expression
21 months ago by jkim ▴ 140
0
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1
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3.2k
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Comment: Comment: Differential Gene Expression
21 months ago by jkim ▴ 140
0
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1
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562
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Comment: Comment: DEGs with uninsteresed sample files
21 months ago by jkim ▴ 140
3
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3
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562
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DEGs with uninsteresed sample files
design bulkRNAseq DEG matrix
updated 21 months ago by 13k • written 21 months ago by ▴ 140
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0
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1.3k
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Comment: C: Snakemake (MissingOutputException) doesn't seem to find output files.
2.3 years ago by jkim ▴ 140
2
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2
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1.3k
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Snakemake (MissingOutputException) doesn't seem to find output files.
Snakemake
2.3 years ago by jkim ▴ 140
1
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5
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1.9k
views
Retrieve all compound ID, Description from a ko ID
KEGG REST API
updated 4.0 years ago by ★ 2.2k • written 4.5 years ago by ▴ 140
0
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1
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1.9k
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Comment: C: Retrieve all compound ID, Description from a ko ID
4.5 years ago by jkim ▴ 140
0
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0
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1.9k
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Comment: C: Retrieve all compound ID, Description from a ko ID
4.5 years ago by jkim ▴ 140
1
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2
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3.2k
views
Answer: A: featureCounts and bash
updated 4.8 years ago by 16k • written 4.8 years ago by ▴ 140
1
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0
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5.4k
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Answer: A: HISAT2 for loop shell scripting
5.2 years ago by jkim ▴ 140
0
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0
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5.2k
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Comment: C: Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
5.4 years ago by jkim ▴ 140
6
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3
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5.2k
views
Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
RNA-Seq pipeline
updated 5.4 years ago by ★ 3.6k • written 5.4 years ago by ▴ 140
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