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Comment: Comment: PCA plot (Suggestions Needed)
14 hours ago by jkim ▴ 170
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229
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Comment: Comment: Error during demultiplexing by bcl2fastq
14 days ago by jkim ▴ 170
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1
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577
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Comment: Comment: 99.9999% of Q30 bases is normal?
14 days ago by jkim ▴ 170
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1
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577
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Comment: Comment: 99.9999% of Q30 bases is normal?
14 days ago by jkim ▴ 170
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0
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397
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Comment: Comment: create a gene count matrix csv file from seurat object
16 days ago by jkim ▴ 170
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1
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397
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Comment: Comment: create a gene count matrix csv file from seurat object
16 days ago by jkim ▴ 170
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1
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397
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Comment: Comment: create a gene count matrix csv file from seurat object
16 days ago by jkim ▴ 170
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6
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397
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create a gene count matrix csv file from seurat object
Seurat sparseMatrix
16 days ago by jkim ▴ 170
1
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1
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600
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Answer: Answer: RNAseq analysis: how to add new gene into an existing worm based reference
3 months ago by jkim ▴ 170
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1
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1.0k
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Comment: Comment: bcl2fastq troubleshooting all reads dumped to "Undetermined"
4 months ago by jkim ▴ 170
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225
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% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
4 months ago by jkim ▴ 170
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1.2k
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Comment: Comment: Nextflow bwa-mem2 pipeline/channel question
5 months ago by jkim ▴ 170
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2
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1.4k
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Comment: Comment: Mentor for a beginner bioinformatics student
6 months ago by jkim ▴ 170
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705
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Comment: Comment: Merge fastq files across different lanes in Nextflow
6 months ago by jkim ▴ 170
3
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3
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705
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Merge fastq files across different lanes in Nextflow
Nextflow Fastq
6 months ago by jkim ▴ 170
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0
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705
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Answer: Answer: Merge fastq files across different lanes in Nextflow
6 months ago by jkim ▴ 170
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0
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1.2k
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Comment: Comment: STAR index not working
7 months ago by jkim ▴ 170
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1
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556
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Comment: Comment: Batch effect consideration (re-seq the same sample twice)
7 months ago by jkim ▴ 170
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3
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556
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Batch effect consideration (re-seq the same sample twice)
RNA-seq batch-effect
updated 7 months ago by 43k • written 7 months ago by ▴ 170
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0
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805
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Comment: Comment: One sample has quite different # of reads from different lanes.
8 months ago by jkim ▴ 170
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1
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805
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Comment: Comment: One sample has quite different # of reads from different lanes.
8 months ago by jkim ▴ 170
4
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4
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805
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One sample has quite different # of reads from different lanes.
demultiplexing illumina fastq
8 months ago by jkim ▴ 170
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1.1k
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Comment: Comment: Double biological replication when using DESeq2
9 months ago by jkim ▴ 170
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0
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737
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Comment: Comment: How to interpret RNAseq output?
9 months ago by jkim ▴ 170
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0
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587
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Comment: Comment: mRNA library preparation Adapter ligation
11 months ago by jkim ▴ 170
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0
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1.1k
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Comment: Comment: How to trim reads for Chip Seq analysis
11 months ago by jkim ▴ 170
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0
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554
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Answer: Answer: What is the best aligner for stranded RNASeq
11 months ago by jkim ▴ 170
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1
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1.7k
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Comment: Comment: trimmomatic on scRNA seq data
11 months ago by jkim ▴ 170
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0
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1.6k
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Comment: Comment: Comparing two RNA-Seq datasets
19 months ago by jkim ▴ 170
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1
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1.6k
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Answer: Answer: Comparing two RNA-Seq datasets
19 months ago by jkim ▴ 170
1
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1
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801
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Comment: Comment: DE analysis with multiple factors
19 months ago by jkim ▴ 170
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1
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1.3k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
19 months ago by jkim ▴ 170
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1
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1.3k
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Comment: Comment: Snakemake + singularity fails to locate bwa index files.
19 months ago by jkim ▴ 170
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5
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1.3k
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Snakemake + singularity fails to locate bwa index files.
singularity snakemake bwa
updated 19 months ago by 22k • written 19 months ago by ▴ 170
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1.5k
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Comment: Comment: Read coverage shows a difference in IGV
20 months ago by jkim ▴ 170
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0
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1.5k
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Comment: Comment: Read coverage shows a difference in IGV
20 months ago by jkim ▴ 170
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1.5k
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Comment: Comment: Read coverage shows a difference in IGV
20 months ago by jkim ▴ 170
0
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0
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1.5k
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Comment: Comment: Read coverage shows a difference in IGV
20 months ago by jkim ▴ 170
3
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7
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1.5k
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Read coverage shows a difference in IGV
coverage BAM
20 months ago by jkim ▴ 170
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0
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5.4k
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Comment: Comment: Is there a limit for SAMTOOLS tview option?
20 months ago by jkim ▴ 170
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0
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1.3k
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Comment: Comment: Filter out reads with hidden tags in bam files
20 months ago by jkim ▴ 170
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0
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1.3k
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Comment: Comment: Filter out reads with hidden tags in bam files
20 months ago by jkim ▴ 170
0
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0
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1.3k
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Comment: Comment: Filter out reads with hidden tags in bam files
20 months ago by jkim ▴ 170
4
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7
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1.3k
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Filter out reads with hidden tags in bam files
BAM samtools
20 months ago by jkim ▴ 170
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1
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1.3k
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Answer: Answer: Filter out reads with hidden tags in bam files
20 months ago by jkim ▴ 170
0
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0
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936
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Answer: Answer: Counts from STAR with stranded protocol
23 months ago by jkim ▴ 170
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1
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1.6k
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Comment: Comment: snakemake workflow
23 months ago by jkim ▴ 170
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0
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1.6k
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Comment: Comment: Biopython first project help
2.1 years ago by jkim ▴ 170
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1
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1.6k
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Comment: Comment: Biopython first project help
2.1 years ago by jkim ▴ 170
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1
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1.9k
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Comment: Comment: BLASTn produces empty output + output is 'Killed'
2.2 years ago by jkim ▴ 170
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