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1
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319
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Comment:
Comment: mRNA library preparation Adapter ligation
29 days ago by
jkim
▴ 140
0
votes
0
replies
349
views
Comment:
Comment: How to trim reads for Chip Seq analysis
4 weeks ago by
jkim
▴ 140
0
votes
0
replies
237
views
Answer:
Answer: What is the best aligner for stranded RNASeq
4 weeks ago by
jkim
▴ 140
0
votes
1
reply
498
views
Comment:
Comment: trimmomatic on scRNA seq data
5 weeks ago by
jkim
▴ 140
0
votes
0
replies
1.2k
views
Answer:
Answer: DESeq2 design formula considerations
7 months ago by
jkim
▴ 140
0
votes
0
replies
782
views
Comment:
Comment: Comparing two RNA-Seq datasets
8 months ago by
jkim
▴ 140
0
votes
1
reply
782
views
Answer:
Answer: Comparing two RNA-Seq datasets
8 months ago by
jkim
▴ 140
1
vote
1
reply
449
views
Comment:
Comment: DE analysis with multiple factors
8 months ago by
jkim
▴ 140
0
votes
1
reply
830
views
Comment:
Comment: Snakemake + singularity fails to locate bwa index files.
9 months ago by
jkim
▴ 140
0
votes
1
reply
830
views
Comment:
Comment: Snakemake + singularity fails to locate bwa index files.
9 months ago by
jkim
▴ 140
3
votes
5
replies
830
views
Snakemake + singularity fails to locate bwa index files.
singularity
snakemake
bwa
updated 8 months ago by
Jeremy Leipzig
21k • written 9 months ago by
jkim
▴ 140
0
votes
0
replies
720
views
Comment:
Comment: Read coverage shows a difference in IGV
9 months ago by
jkim
▴ 140
0
votes
0
replies
720
views
Comment:
Comment: Read coverage shows a difference in IGV
9 months ago by
jkim
▴ 140
0
votes
0
replies
720
views
Comment:
Comment: Read coverage shows a difference in IGV
9 months ago by
jkim
▴ 140
0
votes
0
replies
720
views
Comment:
Comment: Read coverage shows a difference in IGV
9 months ago by
jkim
▴ 140
3
votes
7
replies
720
views
Read coverage shows a difference in IGV
coverage
BAM
9 months ago by
jkim
▴ 140
0
votes
0
replies
4.4k
views
Comment:
Comment: Is there a limit for SAMTOOLS tview option?
9 months ago by
jkim
▴ 140
0
votes
0
replies
804
views
Comment:
Comment: Filter out reads with hidden tags in bam files
9 months ago by
jkim
▴ 140
0
votes
0
replies
804
views
Comment:
Comment: Filter out reads with hidden tags in bam files
9 months ago by
jkim
▴ 140
0
votes
0
replies
804
views
Comment:
Comment: Filter out reads with hidden tags in bam files
9 months ago by
jkim
▴ 140
4
votes
7
replies
804
views
Filter out reads with hidden tags in bam files
BAM
samtools
9 months ago by
jkim
▴ 140
0
votes
1
reply
804
views
Answer:
Answer: Filter out reads with hidden tags in bam files
9 months ago by
jkim
▴ 140
0
votes
0
replies
635
views
Answer:
Answer: Counts from STAR with stranded protocol
12 months ago by
jkim
▴ 140
0
votes
1
reply
954
views
Comment:
Comment: snakemake workflow
13 months ago by
jkim
▴ 140
0
votes
0
replies
1.1k
views
Comment:
Comment: Biopython first project help
14 months ago by
jkim
▴ 140
0
votes
1
reply
1.1k
views
Comment:
Comment: Biopython first project help
14 months ago by
jkim
▴ 140
0
votes
1
reply
1.1k
views
Comment:
Comment: BLASTn produces empty output + output is 'Killed'
16 months ago by
jkim
▴ 140
1
vote
0
replies
1.0k
views
Comment:
Comment: How to rename multiple files?
16 months ago by
jkim
▴ 140
0
votes
0
replies
590
views
Answer:
Answer: Rename fasta file based on coordinates
16 months ago by
jkim
▴ 140
0
votes
1
reply
593
views
Comment:
Comment: Sickle is giving empty trimmed file
16 months ago by
jkim
▴ 140
0
votes
0
replies
1.8k
views
Answer:
Answer: Fastest way to parse through a fasta file in python
16 months ago by
jkim
▴ 140
2
votes
0
replies
2.2k
views
Answer:
Answer: How to convert FASTQ to FASTA
17 months ago by
jkim
▴ 140
2
votes
0
replies
641
views
Answer:
Answer: Basename the contents of a file
17 months ago by
jkim
▴ 140
0
votes
0
replies
3.2k
views
Comment:
Comment: Differential Gene Expression
21 months ago by
jkim
▴ 140
0
votes
1
reply
3.2k
views
Comment:
Comment: Differential Gene Expression
21 months ago by
jkim
▴ 140
0
votes
1
reply
562
views
Comment:
Comment: DEGs with uninsteresed sample files
21 months ago by
jkim
▴ 140
3
votes
3
replies
562
views
DEGs with uninsteresed sample files
design
bulkRNAseq
DEG
matrix
updated 21 months ago by
swbarnes2
13k • written 21 months ago by
jkim
▴ 140
0
votes
0
replies
1.3k
views
Comment:
C: Snakemake (MissingOutputException) doesn't seem to find output files.
2.3 years ago by
jkim
▴ 140
2
votes
2
replies
1.3k
views
Snakemake (MissingOutputException) doesn't seem to find output files.
Snakemake
2.3 years ago by
jkim
▴ 140
1
vote
5
replies
1.9k
views
Retrieve all compound ID, Description from a ko ID
KEGG
REST
API
updated 4.0 years ago by
AK
★ 2.2k • written 4.5 years ago by
jkim
▴ 140
0
votes
1
reply
1.9k
views
Comment:
C: Retrieve all compound ID, Description from a ko ID
4.5 years ago by
jkim
▴ 140
0
votes
0
replies
1.9k
views
Comment:
C: Retrieve all compound ID, Description from a ko ID
4.5 years ago by
jkim
▴ 140
1
vote
2
replies
3.2k
views
Answer:
A: featureCounts and bash
updated 4.8 years ago by
finswimmer
16k • written 4.8 years ago by
jkim
▴ 140
1
vote
0
replies
5.4k
views
Answer:
A: HISAT2 for loop shell scripting
5.2 years ago by
jkim
▴ 140
0
votes
0
replies
5.2k
views
Comment:
C: Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
5.4 years ago by
jkim
▴ 140
6
votes
3
replies
5.2k
views
Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
RNA-Seq
pipeline
updated 5.4 years ago by
Matteo Schiavinato
★ 3.6k • written 5.4 years ago by
jkim
▴ 140
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