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Showing :
questions
2
votes
6
replies
942
views
create a gene count matrix csv file from seurat object
Seurat
sparseMatrix
10 months ago by
jkim
▴ 190
0
votes
0
replies
362
views
% rRNAs discrepancy between sortMeRNA and read count matrices
rRNA
14 months ago by
jkim
▴ 190
3
votes
3
replies
1.3k
views
Merge fastq files across different lanes in Nextflow
Nextflow
Fastq
16 months ago by
jkim
▴ 190
4
votes
3
replies
873
views
Batch effect consideration (re-seq the same sample twice)
RNA-seq
batch-effect
updated 17 months ago by
Ram
44k • written 17 months ago by
jkim
▴ 190
4
votes
4
replies
1.2k
views
One sample has quite different # of reads from different lanes.
demultiplexing
illumina
fastq
18 months ago by
jkim
▴ 190
3
votes
5
replies
1.7k
views
Snakemake + singularity fails to locate bwa index files.
singularity
snakemake
bwa
updated 2.4 years ago by
Jeremy Leipzig
23k • written 2.4 years ago by
jkim
▴ 190
3
votes
7
replies
2.5k
views
Read coverage shows a difference in IGV
coverage
BAM
2.5 years ago by
jkim
▴ 190
4
votes
7
replies
2.0k
views
Filter out reads with hidden tags in bam files
BAM
samtools
2.5 years ago by
jkim
▴ 190
3
votes
3
replies
985
views
DEGs with uninsteresed sample files
design
bulkRNAseq
DEG
matrix
updated 3.5 years ago by
swbarnes2
14k • written 3.5 years ago by
jkim
▴ 190
2
votes
2
replies
2.1k
views
Snakemake (MissingOutputException) doesn't seem to find output files.
Snakemake
4.0 years ago by
jkim
▴ 190
1
vote
5
replies
2.9k
views
Retrieve all compound ID, Description from a ko ID
KEGG
REST
API
updated 5.7 years ago by
AK
★ 2.2k • written 6.2 years ago by
jkim
▴ 190
6
votes
3
replies
6.1k
views
Building RNAseq pipeline STAR-RSEM-tximport-DESeq2
RNA-Seq
pipeline
updated 7.1 years ago by
Matteo Schiavinato
★ 3.6k • written 7.1 years ago by
jkim
▴ 190
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