User: U
U • 70
- Reputation:
- 70
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- Location:
- Boston, MA
- Last seen:
- 1 year, 11 months ago
- Joined:
- 8 years ago
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Posts by U
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... Migmap results show position of amino acid (pos.aa) where the changes (from.aa) occur due to somatic hypermutations to another amino acid (to.aa). I am trying to get the amino acid reference sequences for human IGH,IGL,IGK run. Please let me know how to get this done.
I require this information to ...
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... Is it possible to add additional sample ID's to the reads in a fastq file whilst demultiplexing.
I have pooled sequences from 95 wells for each plate and primer sequences determines the well ID. So currrently, after demultiplexing, I have a script that takes in the input fastq file, reads the first ...
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... I stand corrected it works. Thanks ...
written 2.3 years ago by
U • 70
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... This is the results
migmap-1.0.2$ java -cp migmap-1.0.2 jar com.antigenomics.migmap.MergeContigs
Error: Could not find or load main class jar
I am not sure if I should download the source from github and gradle build it to let this class load
...
written 2.3 years ago by
U • 70
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... I am using migmap-1.0.2 jar file for analysis but not sure how to run com.antigenomics.migmap.MergeContigs
Obviously there is no SRC files in this download hence cannot access these build files. So is the alternative to download source codes from github and do a gradle build ? ...
written 2.3 years ago by
U • 70
• updated
2.3 years ago by
Pierre Lindenbaum ♦ 126k
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... Does anyone know the R or python package used to produce an image as given below. I would like to plot tumor frequency models. Thanks
[Mutational burden plot][1]
[1]: https://image.ibb.co/jrAMyw/mut_freq.png ...
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... I have read about 119 CEL files in my rawdata object using ReadAffy.
In this there are CEL files 1:106 comprising of individual patient data that needs to be compared with normal CEL files 107:119. If I want to contrast each CEL files 1:106 with normal CEL files(107:119), how would I create a desi ...
written 2.8 years ago by
U • 70
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... We are in the process of hiring software engineers and bioinformaticians, so please feel free to send your recent resume to stqa8350@gmail.com
I. Systems Architect
Institution: Massachusetts General Hospital, Boston, MA
Department: Pathology
Position: Systems Architect
Salary: Commensurate with le ...
written 6.9 years ago by
U • 70
• updated
6.9 years ago by
Istvan Albert ♦♦ 82k
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... Just as an update, with the configure script.. the error is to declare the bam-root
checking for bamlib... configure: error: We could not detect the bam libraries (version or higher). If you have a staged bam library (still not installed) please specify $BAM_ROOT in your environment and do not give ...
written 8.1 years ago by
U • 70
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... Thanks for the previous comments, I will have a go at this again. ...
written 8.1 years ago by
U • 70
Latest awards to U
Student
2.7 years ago,
asked a question with at least 3 up-votes.
For Tophat Installation On Ubuntu 11.10 Server
Great Question
6.9 years ago,
created a question with more than 5,000 views.
For Tophat Installation On Ubuntu 11.10 Server
Popular Question
6.9 years ago,
created a question with more than 1,000 views.
For Tophat Installation On Ubuntu 11.10 Server
Popular Question
6.9 years ago,
created a question with more than 1,000 views.
For Staff Scientists Positions: System Architect And Bioinformatics Engineer, Massachusetts General Hospital, Boston,
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