User: U

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U70
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70
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Boston, MA
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1 year, 11 months ago
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8 years ago
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Posts by U

<prev • 13 results • page 1 of 2 • next >
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migmap (Igblast wrapper), aa position
... Migmap results show position of amino acid (pos.aa) where the changes (from.aa) occur due to somatic hypermutations to another amino acid (to.aa). I am trying to get the amino acid reference sequences for human IGH,IGL,IGK run. Please let me know how to get this done. I require this information to ...
sequence next-gen alignment blast snp written 2.1 years ago by U70 • updated 2.0 years ago by Biostar ♦♦ 20
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Dual demultiplexing on illumina sequences
... Is it possible to add additional sample ID's to the reads in a fastq file whilst demultiplexing. I have pooled sequences from 95 wells for each plate and primer sequences determines the well ID. So currrently, after demultiplexing, I have a script that takes in the input fastq file, reads the first ...
illumina ngs ig demultiplexing written 2.2 years ago by U70 • updated 2.2 years ago by h.mon29k
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Comment: C: migmap.jar com.antigenomics.migmap.MergeContigs Question
... I stand corrected it works. Thanks ...
written 2.3 years ago by U70
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Comment: C: migmap.jar com.antigenomics.migmap.MergeContigs Question
... This is the results migmap-1.0.2$ java -cp migmap-1.0.2 jar com.antigenomics.migmap.MergeContigs Error: Could not find or load main class jar I am not sure if I should download the source from github and gradle build it to let this class load ...
written 2.3 years ago by U70
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migmap.jar com.antigenomics.migmap.MergeContigs Question
... I am using migmap-1.0.2 jar file for analysis but not sure how to run com.antigenomics.migmap.MergeContigs Obviously there is no SRC files in this download hence cannot access these build files. So is the alternative to download source codes from github and do a gradle build ? ...
rna-seq written 2.3 years ago by U70 • updated 2.3 years ago by Pierre Lindenbaum126k
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R package to plot mutational frequency
... Does anyone know the R or python package used to produce an image as given below. I would like to plot tumor frequency models. Thanks [Mutational burden plot][1] [1]: https://image.ibb.co/jrAMyw/mut_freq.png ...
R next-gen rna-seq written 2.4 years ago by U70 • updated 2.4 years ago by Mike1.5k
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Creating a contrast matrix for some datasets with no replicates with bunch of normal datasets with replicates
... I have read about 119 CEL files in my rawdata object using ReadAffy. In this there are CEL files 1:106 comprising of individual patient data that needs to be compared with normal CEL files 107:119. If I want to contrast each CEL files 1:106 with normal CEL files(107:119), how would I create a desi ...
affy microarray limma written 2.8 years ago by U70
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Job: Staff Scientists Positions: System Architect And Bioinformatics Engineer, Massachusetts General Hospital, Boston,
... We are in the process of hiring software engineers and bioinformaticians, so please feel free to send your recent resume to stqa8350@gmail.com I. Systems Architect Institution: Massachusetts General Hospital, Boston, MA Department: Pathology Position: Systems Architect Salary: Commensurate with le ...
job written 6.9 years ago by U70 • updated 6.9 years ago by Istvan Albert ♦♦ 82k
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Comment: A: Tophat Installation On Ubuntu 11.10 Server
... Just as an update, with the configure script.. the error is to declare the bam-root checking for bamlib... configure: error: We could not detect the bam libraries (version or higher). If you have a staged bam library (still not installed) please specify $BAM_ROOT in your environment and do not give ...
written 8.1 years ago by U70
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Comment: A: Tophat Installation On Ubuntu 11.10 Server
... Thanks for the previous comments, I will have a go at this again. ...
written 8.1 years ago by U70

Latest awards to U

Student 2.7 years ago, asked a question with at least 3 up-votes. For Tophat Installation On Ubuntu 11.10 Server
Great Question 6.9 years ago, created a question with more than 5,000 views. For Tophat Installation On Ubuntu 11.10 Server
Popular Question 6.9 years ago, created a question with more than 1,000 views. For Tophat Installation On Ubuntu 11.10 Server

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