Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : answers
5
votes
0
replies
293
views
Answer: Answer: what is IGV visualization lighter color variants stand for
6 months ago by Jorge Amigo 14k
1
vote
0
replies
576
views
Answer: Answer: Count values based on condition
16 months ago by Jorge Amigo 14k
3
votes
0
replies
941
views
Answer: Answer: How to distinguish INDELs from SNPs.
21 months ago by Jorge Amigo 14k
1
vote
0
replies
1.1k
views
Answer: Answer: Detecting chromosone notation in vcf files
21 months ago by Jorge Amigo 14k
1
vote
0
replies
1.7k
views
Answer: Answer: Compare two VCF files in Python
2.0 years ago by Jorge Amigo 14k
2
votes
0
replies
1.1k
views
Answer: Answer: How to adjust sequence line to 60bp?
2.1 years ago by Jorge Amigo 14k
0
votes
0
replies
633
views
Answer: Answer: Platypus
2.1 years ago by Jorge Amigo 14k
3
votes
1
reply
881
views
Answer: Answer: Convert a VCF-file in a user specific Format
2.1 years ago by Jorge Amigo 14k
3
votes
1
reply
775
views
Answer: Answer: Count number of occurrences an annotation in a multisample vcf split into multip
2.2 years ago by Jorge Amigo 14k
2
votes
1
reply
1.2k
views
Answer: Answer: Sum up value within a interval
2.2 years ago by Jorge Amigo 14k
0
votes
1
reply
964
views
Answer: Answer: annotate sites with gene info
2.2 years ago by Jorge Amigo 14k
3
votes
0
replies
3.8k
views
Answer: Answer: How to generate start & end coordinates for each chromosome of human ref genome
2.2 years ago by Jorge Amigo 14k
1
vote
0
replies
2.0k
views
Answer: Answer: Extract chromosome 1 - 22 ,X and Y from BAM file
2.3 years ago by Jorge Amigo 14k
2
votes
1
reply
861
views
Answer: Answer: How do I write the regex expression for the line?
2.3 years ago by Jorge Amigo 14k
1
vote
1
reply
2.3k
views
Answer: Answer: Installing Bedtools with Cygwin fails.
2.4 years ago by Jorge Amigo 14k
0
votes
0
replies
846
views
Answer: Answer: Find all genes in multiple regions
2.4 years ago by Jorge Amigo 14k
2
votes
1
reply
926
views
Answer: Answer: How to capture the position of SNPs from the gene's locations
2.4 years ago by Jorge Amigo 14k
2
votes
1
reply
2.2k
views
Answer: Answer: Bamtools stats and samtools flagstat produce different results and confusing my
2.4 years ago by Jorge Amigo 14k
1
vote
1
reply
1.8k
views
Answer: Answer: How do I interpret a 200bp reduction of coverage in a gene exon?
2.4 years ago by Jorge Amigo 14k
4
votes
1
reply
2.1k
views
Answer: Answer: How to filter a vcf file based on genotype of first two samples
2.4 years ago by Jorge Amigo 14k
1
vote
1
reply
4.2k
views
Answer: Answer: How to convert maf to vcf while retaining original mutation notations?
2.4 years ago by Jorge Amigo 14k
1
vote
1
reply
1.5k
views
Answer: Answer: alignement and Variant calling with BWA and samtools
2.4 years ago by Jorge Amigo 14k
2
votes
1
reply
2.1k
views
Answer: Answer: How to filter a vcf file based on genotype of first two samples
2.4 years ago by Jorge Amigo 14k
1
vote
0
replies
766
views
Answer: Answer: SNP count in a set of genomic regions
2.4 years ago by Jorge Amigo 14k
1
vote
0
replies
681
views
Answer: Answer: two allele frequency
2.4 years ago by Jorge Amigo 14k
2
votes
0
replies
2.2k
views
Answer: Answer: 1000G Tabix download: EOF marker is absent
2.4 years ago by Jorge Amigo 14k
0
votes
0
replies
2.6k
views
Answer: Answer: How to get SNPs genotype matrix from vcf file for JoinMap analysis?
2.4 years ago by Jorge Amigo 14k
0
votes
0
replies
1.4k
views
Answer: Answer: ExomeDepth negative BF (bayesian factor) values meaning
2.5 years ago by Jorge Amigo 14k
0
votes
0
replies
2.4k
views
Answer: Answer: How to extract specific fasta files ?
2.5 years ago by Jorge Amigo 14k
3
votes
0
replies
2.6k
views
Answer: Answer: Any standalone tool for INDEL Realignment?
2.5 years ago by Jorge Amigo 14k
0
votes
0
replies
1.3k
views
Answer: Answer: Replace headers of fasta while with simplified headers from another file
2.5 years ago by Jorge Amigo 14k
1
vote
1
reply
1.1k
views
Answer: Answer: calculation synonymous and non-synonymous allele counts in a VCF file
2.5 years ago by Jorge Amigo 14k
2
votes
0
replies
1.0k
views
Answer: Answer: BAM file download for just a few genes
2.5 years ago by Jorge Amigo 14k
1
vote
0
replies
1.2k
views
Answer: Answer: Is there any gene nomenclature conversion tool that recognizes old names?
2.5 years ago by Jorge Amigo 14k
1
vote
0
replies
1.0k
views
Answer: Answer: How to merge several BED files to create a comprehensive overview file
2.5 years ago by Jorge Amigo 14k
2
votes
0
replies
5.8k
views
Answer: Answer: how to split multi-fasta file into single fasta file named by header
2.5 years ago by Jorge Amigo 14k
1
vote
0
replies
3.4k
views
Answer: A: How to extract a sequence below a fasta header (">") from a fasta file ?
2.7 years ago by Jorge Amigo 14k
1
vote
0
replies
880
views
Answer: A: editing gtf file
2.7 years ago by Jorge Amigo 14k
1
vote
1
reply
780
views
Answer: A: how to filter sequence database with bash?
2.7 years ago by Jorge Amigo 14k
1
vote
0
replies
2.1k
views
Answer: A: Issues with reading .bed files and compressing output in a specific format
2.7 years ago by Jorge Amigo 14k
0
votes
0
replies
1.1k
views
Answer: A: how to combine two bed files using the same ID information
2.8 years ago by Jorge Amigo 14k
2
votes
1
reply
2.1k
views
Answer: A: Is there a tool to predict if a missense variant causes a loss of function on th
2.8 years ago by Jorge Amigo 14k
0
votes
0
replies
552
views
Answer: A: Heterozygous types in VCF
2.8 years ago by Jorge Amigo 14k
1
vote
1
reply
5.6k
views
Answer: A: Failed to open plain.vcf: unknown file type
2.8 years ago by Jorge Amigo 14k
1
vote
0
replies
2.2k
views
Answer: A: How to create a SNP VCF file?
2.8 years ago by Jorge Amigo 14k
1
vote
0
replies
2.3k
views
Answer: A: How to count the number of codons in a frame or order using the equation?
2.8 years ago by Jorge Amigo 14k
2
votes
1
reply
582
views
Answer: A: Is this a novel SNV?
2.9 years ago by Jorge Amigo 14k
3
votes
0
replies
704
views
Answer: A: Masking Y chromosomes
2.9 years ago by Jorge Amigo 14k
4
votes
0
replies
2.9k
views
Answer: A: Why is gnomAD AF vs gnomAD exome AF so different?
2.9 years ago by Jorge Amigo 14k
8
votes
2
replies
1.0k
views
Answer: A: Intronless genes in the human genome annotation
2.9 years ago by Jorge Amigo 14k
412 results • Page 1 of 9
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6