User: cugopal

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cugopal0
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Posts by cugopal

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Comment: C: Visualizing pacbio-derived alignment in IGV
... Thanks for the pointer to `bam2fastx`. Does it produce a different result from e.g. `samtools fastq`? ...
written 3 months ago by cugopal0
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Comment: C: Visualizing pacbio-derived alignment in IGV
... @ATpoint @genomax Yes, the BAM file only contains the reads, and not the alignment, which is what I assumed. Sorry. Thanks for your answers. ...
written 3 months ago by cugopal0
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Visualizing pacbio-derived alignment in IGV
... I have an alignment file (`BAM`) and an associated index file (`pbi`) delivered to me by the sequencing provider. I am trying to visualize the alignments in `IGV` (v2.8.0). I first tried to index the (sorted) BAM file using `samtools` as follows but it creates an empty index (`bai`) file. samto ...
alignment igv pbi bam written 3 months ago by cugopal0

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