... For lncRNA only, if it helps anyone, I am planning to try out softwares discussed in following thread:
: https://www.biostars.org/p/336673/ ...
... Hi All,
I have total RNA-seq data from Illumina. I am trying to find a decent software to detect and analyse long non-coding RNA (lncRNA) and circular RNA (circRNA).
For circRNA, I am thinking of circExplorer2 mostly. Please suggest any other alternatives. I am unable to find a software for lncRNA ...
... Re-run by replacing the last portion of your command: '-t Human -g -1 hsa -v' with '-t hsa'. ...
... Hi all,
I have been using the script provided by StringTie named 'prepDE.py' for getting gene and transcript abundances. It was working fine with another set of mouse samples but failing now with these set of human samples.
/Softwares/prepDE.py -i grouping-info.txt
... Hi All,
I have around say 150 differentially expressed (DE) genes between 2 groups (control and treatment of a disease) by RNA-seq. My goal is to really shorten this list and find that few number of genes, which are of utmost significance which acts as a marker for this disease.
Now my problem is ...
written 17 months ago by
Rituriya • 30
17 months ago by
Buffo • 1.8k