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2
votes
1
reply
1.4k
views
Answer:
C: Interested in RNA-Seq splicing analysis - go for paired-end shorter or single-en
4.7 years ago by
Amitm
★ 2.3k
2
votes
0
replies
944
views
Answer:
C: How I deal with redundant genes in microarray
4.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
3.3k
views
Comment:
C: Low percent of RNA-seq reads mapping
4.7 years ago by
Amitm
★ 2.3k
0
votes
1
reply
3.3k
views
Comment:
C: Low percent of RNA-seq reads mapping
4.7 years ago by
Amitm
★ 2.3k
2
votes
1
reply
3.3k
views
Answer:
A: Low percent of RNA-seq reads mapping
4.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
1.2k
views
Comment:
C: database for mouse tumor supressor genes and oncogenes
4.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
1.0k
views
Comment:
C: Call CNVs using gene positions
4.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
671
views
Comment:
C: Processed loci from Cufflinks
4.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
1.0k
views
Comment:
C: Using dbSNP dataset
4.7 years ago by
Amitm
★ 2.3k
5
votes
1
reply
1.7k
views
Answer:
A: What is a better strategy for finding novel transcripts?
4.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
3.1k
views
Answer:
A: What is the state of multi-omics dataset ?
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
1
reply
3.2k
views
Comment:
C: Ballgown plotTranscripts function
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
11k
views
Answer:
C: how to download gene annotation bed file from ensembl?
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
3.1k
views
Comment:
C: analyzing RNAseq data in cytoscape
updated 4.7 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
2
replies
3.1k
views
Comment:
Comment: analyzing RNAseq data in cytoscape
updated 2.4 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
2.8k
views
Answer:
A: Agilent SureSelect design miss some target regions
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
2
replies
3.7k
views
Comment:
C: Could you explain the percentage of A, C , G, T in hg19 ?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
1
reply
3.5k
views
Answer:
C: Obtaining length and %GC of genes using Biomart
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
10k
views
Comment:
Comment: Calculating Mapping Coverage
updated 2.9 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
8.2k
views
Answer:
A: RefSeq Ids(NM*, NR*) to ensemble transcript Ids (ENST*)
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
3.7k
views
Comment:
C: Somatic allele frequency from TCGA in non-coding DNA
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
3.7k
views
Comment:
C: Somatic allele frequency from TCGA in non-coding DNA
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
2.3k
views
Comment:
C: co-expression of genes in normal and cancer
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
3.1k
views
Comment:
C: htseq-count produces no features amid alignment
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
2
votes
1
reply
17k
views
Comment:
C: How to efficiently remove a list of reads from BAM file?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
1
reply
3.0k
views
Comment:
C: Pipeline for RNA-seq analysis
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
8.1k
views
Answer:
A: Intersect multiple BED files
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
1.8k
views
Comment:
C: new gene discovery
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
2
replies
13k
views
Comment:
C: MarkDuplicates memory issue
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
1.5k
views
Comment:
C: Download multiple RNAseq experiments
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
4.7k
views
Comment:
A: Can I use sorted bam files from STAR with Stringtie?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
0
replies
4.7k
views
Answer:
A: Can I use sorted bam files from STAR with Stringtie?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
1
reply
5.0k
views
Comment:
C: how to add a pseduo gene into a GTF file?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
0
replies
5.3k
views
Comment:
C: How can I detect lncRNA?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
1
reply
5.3k
views
Answer:
A: How can I detect lncRNA?
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
0
votes
1
reply
5.1k
views
Comment:
C: Fusion gene detection software
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
1
vote
1
reply
5.1k
views
Answer:
A: Fusion gene detection software
updated 4.8 years ago by
Ram
44k • written 8.7 years ago by
Amitm
★ 2.3k
2
votes
1
reply
3.1k
views
Answer:
A: RNA Expression Transcript Level Collapse
updated 4.9 years ago by
Ram
44k • written 9.3 years ago by
Amitm
★ 2.3k
0
votes
0
replies
3.9k
views
Comment:
C: faster variant annotation for large VCFs
6.0 years ago by
Amitm
★ 2.3k
0
votes
0
replies
3.8k
views
Comment:
C: I can't convert the sam file to fastq file.
updated 6.0 years ago by
Ram
44k • written 8.6 years ago by
Amitm
★ 2.3k
1
vote
1
reply
3.4k
views
Comment:
C: How can get MAF for set of SNPs from each population based on 1000 Genome?
updated 6.0 years ago by
Kevin Blighe
88k • written 8.6 years ago by
Amitm
★ 2.3k
1
vote
0
replies
3.4k
views
Comment:
C: How can get MAF for set of SNPs from each population based on 1000 Genome?
updated 6.0 years ago by
Kevin Blighe
88k • written 8.6 years ago by
Amitm
★ 2.3k
0
votes
0
replies
3.9k
views
Comment:
C: faster variant annotation for large VCFs
6.0 years ago by
Amitm
★ 2.3k
0
votes
0
replies
4.3k
views
Comment:
C: Pipeline of structural variation calling using multiple tools for multiple sampl
updated 6.0 years ago by
Ram
44k • written 8.6 years ago by
Amitm
★ 2.3k
1
vote
1
reply
3.3k
views
Comment:
C: Can RNA-Seq be Used to Predict Non-Synonymous Mutational Load in a Non-Matched S
updated 6.1 years ago by
Ram
44k • written 8.6 years ago by
Amitm
★ 2.3k
3
votes
8
replies
3.9k
views
faster variant annotation for large VCFs
vcf
variant annotation
WGS
updated 6.1 years ago by
Emily
24k • written 6.1 years ago by
Amitm
★ 2.3k
0
votes
1
reply
3.9k
views
Comment:
C: faster variant annotation for large VCFs
6.1 years ago by
Amitm
★ 2.3k
0
votes
0
replies
6.3k
views
Comment:
C: Removing everything after the last underscore in the header of a fastafile
6.1 years ago by
Amitm
★ 2.3k
0
votes
1
reply
6.3k
views
Answer:
A: Removing everything after the last underscore in the header of a fastafile
6.1 years ago by
Amitm
★ 2.3k
1
vote
2
replies
7.4k
views
Answer:
C: GISTIC input parameters.
6.1 years ago by
Amitm
★ 2.3k
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