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2.9k
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Comment: Comment: --normalizeUsing RPGC
22 months ago by Amitm ★ 2.3k
0
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1
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2.2k
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Comment: Comment: VCF indexing
2.1 years ago by Amitm ★ 2.3k
1
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1
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2.1k
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Comment: Comment: Issue VEP installation MacOS
2.1 years ago by Amitm ★ 2.3k
0
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0
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2.4k
views
Comment: Comment: differences between trajectories in conditions with Monocle3 or other tools
2.1 years ago by Amitm ★ 2.3k
1
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1
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2.4k
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Comment: Comment: differences between trajectories in conditions with Monocle3 or other tools
2.1 years ago by Amitm ★ 2.3k
2
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1
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3.2k
views
Comment: Comment: Integrated Seurat object change name of the two conditions
2.1 years ago by Amitm ★ 2.3k
0
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1
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3.2k
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Comment: Comment: Integrated Seurat object change name of the two conditions
2.1 years ago by Amitm ★ 2.3k
1
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1
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2.3k
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Comment: Comment: Using STAR aligner to build index of hg38
2.2 years ago by Amitm ★ 2.3k
2
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1
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8.8k
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Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
updated 17 months ago by 45k • written 2.4 years ago by ★ 2.3k
1
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1
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3.4k
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Answer: Answer: IGV coverage bar has color, but no mutation?
2.8 years ago by Amitm ★ 2.3k
0
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0
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6.5k
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Comment: Comment: R Columns to Seurat Object
2.8 years ago by Amitm ★ 2.3k
0
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1
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6.5k
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Comment: Comment: R Columns to Seurat Object
2.8 years ago by Amitm ★ 2.3k
3
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1
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6.5k
views
Answer: Answer: Need help understanding reference transcriptome and where to download
2.8 years ago by Amitm ★ 2.3k
0
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1
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6.5k
views
Comment: Comment: R Columns to Seurat Object
2.8 years ago by Amitm ★ 2.3k
1
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1
reply
6.5k
views
Answer: Answer: R Columns to Seurat Object
2.8 years ago by Amitm ★ 2.3k
1
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1
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948
views
Comment: Comment: Mutation callin For RNASeq
2.9 years ago by Amitm ★ 2.3k
0
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0
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3.6k
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Comment: Comment: Can't convert SRA to FASTQ with fasterq-dump. fasterq-dump was killed (signal 9
2.9 years ago by Amitm ★ 2.3k
3
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1
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3.6k
views
Answer: Answer: How to download the entire Run from Basespace illumina
3.0 years ago by Amitm ★ 2.3k
0
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0
replies
6.6k
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Comment: Comment: how to interpret a CNV scatter plot
3.0 years ago by Amitm ★ 2.3k
0
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1
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12k
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Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Amitm ★ 2.3k
0
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1
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12k
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Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Amitm ★ 2.3k
0
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1
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12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Amitm ★ 2.3k
0
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1
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12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Amitm ★ 2.3k
1
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1
reply
2.3k
views
Comment: C: Error in GATK HaplotypeCaller
4.9 years ago by Amitm ★ 2.3k
0
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1
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2.3k
views
Comment: C: Error in GATK HaplotypeCaller
4.9 years ago by Amitm ★ 2.3k
0
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1
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12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Amitm ★ 2.3k
1
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2
replies
12k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Amitm ★ 2.3k
3
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1
reply
1.5k
views
Answer: C: Detecting CNVs from BAM file
4.9 years ago by Amitm ★ 2.3k
2
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1
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12k
views
Answer: A: STAR and StringTie to identify novel isoforms (please check my work)
4.9 years ago by Amitm ★ 2.3k
0
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0
replies
1.6k
views
Comment: C: How to create coverage graph/plot for an entire Illumina run
4.9 years ago by Amitm ★ 2.3k
1
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1
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2.5k
views
Comment: C: Platypus variant caller error
4.9 years ago by Amitm ★ 2.3k
1
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1
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2.5k
views
Comment: C: Platypus variant caller error
4.9 years ago by Amitm ★ 2.3k
0
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2
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2.5k
views
Comment: C: Platypus variant caller error
4.9 years ago by Amitm ★ 2.3k
0
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1
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2.6k
views
Comment: C: How to identify mRNA 3' UTR by bulk RNA-seq data
5.1 years ago by Amitm ★ 2.3k
0
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1
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1.8k
views
Comment: C: Platypus variant caller error
5.1 years ago by Amitm ★ 2.3k
1
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2
replies
6.6k
views
Comment: C: how to interpret a CNV scatter plot
5.1 years ago by Amitm ★ 2.3k
4
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1
reply
6.6k
views
Answer: C: how to interpret a CNV scatter plot
5.1 years ago by Amitm ★ 2.3k
0
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0
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2.9k
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Comment: C: Annotating VCF files
5.1 years ago by Amitm ★ 2.3k
0
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0
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1.9k
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Comment: C: Creating bed file for gene specific variant extraction from VCF file
5.1 years ago by Amitm ★ 2.3k
1
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1
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4.0k
views
Comment: C: De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2)
5.1 years ago by Amitm ★ 2.3k
0
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2
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1.9k
views
Answer: A: Creating bed file for gene specific variant extraction from VCF file
5.2 years ago by Amitm ★ 2.3k
0
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1
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3.0k
views
Comment: C: WES or WGS
5.2 years ago by Amitm ★ 2.3k
1
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1
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8.6k
views
Comment: C: how to get the installation histort of conda
5.2 years ago by Amitm ★ 2.3k
2
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1
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4.3k
views
Answer: A: TSS of canonical transcripts
5.2 years ago by Amitm ★ 2.3k
0
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1
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1.4k
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Comment: C: Getting huge size of CNV region from CNV-kit with hybrid data.
5.3 years ago by Amitm ★ 2.3k
0
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0
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3.3k
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Comment: C: Stringtie duplicate transcripts
5.6 years ago by Amitm ★ 2.3k
0
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0
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2.2k
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Comment: C: VCF to maf
5.6 years ago by Amitm ★ 2.3k
1
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1
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2.5k
views
Comment: C: Suggestion needed for finding fusion transcripts
5.8 years ago by Amitm ★ 2.3k
1
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0
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1.6k
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Answer: C: Classifying normal vs cancer tissues from mutational data
5.8 years ago by Amitm ★ 2.3k
4
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2
replies
2.5k
views
Answer: C: Suggestion needed for finding fusion transcripts
5.8 years ago by Amitm ★ 2.3k
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