User: BPors

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BPors40
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1 year, 3 months ago
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3 years, 7 months ago
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Posts by BPors

<prev • 23 results • page 3 of 3 • next >
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Sorting samtools output by flag or grepping its tags
... Hi! I am getting confused with couple samtools outputs. I have run bwa-mem with -M flag to retrieve chimeric reads with 256 flag, and converted the sam file to bam file. Problem is, in the original bam file, if I want to count the lines with 256 flag, and if I want to retrieve "SA" tags, the number ...
flag grep samtools chimeric written 3.2 years ago by BPors40 • updated 2.3 years ago by Biostar ♦♦ 20
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How to remove certain samples from SummarizedExperiment dataset? (BioConductor)
... Hi, I am having a problem with my SummarizedExperiment dataset. I have a RNA-seq data and I want to analyze gene expression from there. However, I want to remove certain samples from the dataset and I could not be able to do it. The code I had tried until now: > library(SummarizedExperimen ...
R bioconductor tcga rna-seq summarizedexperiment written 3.4 years ago by BPors40
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ClustalW modifies the input sequence
... Hi! I am trying to calculate accuracy for my program which does prediction of aminoacid-aminoacid interactions. However, I am using ClustalW to create multiple sequence alignments, and it changes the input sequence,modifies it with adding gaps or other aminoacids. To be able to compare accuracy fo ...
contactmap clustalw accuracy coevolution written 3.6 years ago by BPors40

Latest awards to BPors

Popular Question 2.7 years ago, created a question with more than 1,000 views. For How to remove certain samples from SummarizedExperiment dataset? (BioConductor)

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