User: bioyas

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bioyas0
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Posts by bioyas

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Comment: C: How to get the gene expression matrix from GEO while getGEO returns 0 features?
... Thanks for your response. On the GEO page I can see that there is a file "GSE104075_RAW.tar" that contains the bed files. I have unzipped them and I see the files with ".bed" and ".bedGraph". Do you think I can use this files to get the gene expression data? Do you think I can convert bed files t ...
written 4 months ago by bioyas0
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How to get the gene expression matrix from GEO while getGEO returns 0 features?
... Hi, I would like to download the gene expression data with GEO accession number "GSE104075" from GEO repository. here is my code: gset <- getGEO("GSE104075",GSEMatrix =TRUE, getGPL=TRUE, AnnotGPL=TRUE) if (length(gset) > 1) idx <- grep("GPL21298", attr(gset, "names")) else idx ...
atacseq geo getgeo rna-seq getquery written 4 months ago by bioyas0 • updated 4 months ago by ATpoint25k

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