User: akij

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akij90
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Posts by akij

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Comment: C: Copy number variation in normal and cancer tissue
... Thanks. Your paper is the answer I was looking for. Do you happen to know more articles or resources about the potential of CNV detection in cancer screening? It would be nice if you share them. Thanks ...
written 22 months ago by akij90
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Copy number variation in normal and cancer tissue
... What are the potentials of copy number variations in cancer screening. Can CNV be used for cancer detection? ...
cnv written 22 months ago by akij90
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Comment: C: Download list of all genes of genome build GRCh38.p0
... Hi! Thanks a lot. Is there any API where I can input chromosome regions like `19:53569378-53577953` and get a list of Genes within this region for genome build `GRCh38.p0`? ...
written 23 months ago by akij90
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Comment: C: Download list of all genes of genome build GRCh38.p0
... Could you explain how? I don't see the build version I mentioned there ...
written 23 months ago by akij90
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Download list of all genes of genome build GRCh38.p0
... I need to download the list of all genes with their location of genome build GRCh38.p0. Is there any API for this? I just need the gene names and their location something like this gene name chromosome start end ZNF331 19:53569378-53577953 ...
gene written 23 months ago by akij90 • updated 23 months ago by aka001190
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Comment: C: How to save GRanges object to csv file
... I get error `Error in as.vector(x) : no method for coercing this S4 class to a vector` ...
written 23 months ago by akij90
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Comment: C: How to save GRanges object to csv file
... write.csv(l, file = "MyData.csv") Error in as.vector(x) : no method for coercing this S4 class to a vector ...
written 23 months ago by akij90
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How to save GRanges object to csv file
... Currently this is what I do library(Homo.sapiens) l <- genes(TxDb.Hsapiens.UCSC.hg19.knownGene) > l GRanges object with 23056 ranges and 1 metadata column: seqnames ranges strand | gene_id | 1 ch ...
export granges written 23 months ago by akij90 • updated 23 months ago by Charles Plessy2.7k
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(Closed) API for gene names by location
... Is there any API where I can input chromosome location and it will provide us gene names, for example input chr: 1 location 154714693:154754070 and it will return a list of gene names or ID within this region? ...
gene written 23 months ago by akij90
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Comment: C: Obtain The Gene Level Cnv Matrix From Tcga Level3 Cnv Data
... Hi! how did you get the refGene regions from CNV regions. I also need gene level CNV matrix. How did you get that? ...
written 23 months ago by akij90

Latest awards to akij

Student 2.2 years ago, asked a question with at least 3 up-votes. For Convert Gene location from one human genome build to another

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