User: akij

gravatar for akij
akij100
Reputation:
100
Status:
Trusted
Location:
Last seen:
2 years, 7 months ago
Joined:
3 years, 2 months ago
Email:
s*******@gmail.com

Posts by akij

<prev • 30 results • page 1 of 3 • next >
0
votes
1
answer
1.0k
views
1
answers
Comment: C: Copy number variation in normal and cancer tissue
... Thanks. Your paper is the answer I was looking for. Do you happen to know more articles or resources about the potential of CNV detection in cancer screening? It would be nice if you share them. Thanks ...
written 2.7 years ago by akij100
5
votes
1
answer
1.0k
views
5 follow
1
answer
Copy number variation in normal and cancer tissue
... What are the potentials of copy number variations in cancer screening. Can CNV be used for cancer detection? ...
cnv written 2.7 years ago by akij100
0
votes
1
answer
2.0k
views
1
answers
Comment: C: Download list of all genes of genome build GRCh38.p0
... Hi! Thanks a lot. Is there any API where I can input chromosome regions like `19:53569378-53577953` and get a list of Genes within this region for genome build `GRCh38.p0`? ...
written 2.7 years ago by akij100
0
votes
1
answer
2.0k
views
1
answers
Comment: C: Download list of all genes of genome build GRCh38.p0
... Could you explain how? I don't see the build version I mentioned there ...
written 2.7 years ago by akij100
2
votes
1
answer
2.0k
views
7 follow
1
answer
Download list of all genes of genome build GRCh38.p0
... I need to download the list of all genes with their location of genome build GRCh38.p0. Is there any API for this? I just need the gene names and their location something like this gene name chromosome start end ZNF331 19:53569378-53577953 ...
gene written 2.7 years ago by akij100 • updated 2.7 years ago by aka001190
0
votes
3
answers
4.0k
views
3
answers
Comment: C: How to save GRanges object to csv file
... I get error `Error in as.vector(x) : no method for coercing this S4 class to a vector` ...
written 2.7 years ago by akij100
0
votes
3
answers
4.0k
views
3
answers
Comment: C: How to save GRanges object to csv file
... write.csv(l, file = "MyData.csv") Error in as.vector(x) : no method for coercing this S4 class to a vector ...
written 2.7 years ago by akij100
2
votes
3
answers
4.0k
views
5 follow
3
answers
How to save GRanges object to csv file
... Currently this is what I do library(Homo.sapiens) l <- genes(TxDb.Hsapiens.UCSC.hg19.knownGene) > l GRanges object with 23056 ranges and 1 metadata column: seqnames ranges strand | gene_id | 1 ch ...
export granges written 2.7 years ago by akij100 • updated 2.7 years ago by Charles Plessy2.7k
1
vote
0
answers
804
views
0
answers
(Closed) API for gene names by location
... Is there any API where I can input chromosome location and it will provide us gene names, for example input chr: 1 location 154714693:154754070 and it will return a list of gene names or ID within this region? ...
gene written 2.8 years ago by akij100
0
votes
1
answer
5.2k
views
1
answers
Comment: C: Obtain The Gene Level Cnv Matrix From Tcga Level3 Cnv Data
... Hi! how did you get the refGene regions from CNV regions. I also need gene level CNV matrix. How did you get that? ...
written 2.8 years ago by akij100

Latest awards to akij

Student 3.0 years ago, asked a question with at least 3 up-votes. For Convert Gene location from one human genome build to another

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 944 users visited in the last hour