User: jozs2019

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jozs20190
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Posts by jozs2019

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Comment: C: ABySS error: sequence and quality must be the same length near ...
... I had a look at the file, and as you said, line 745672 was truncated in length. It was also the final line of a fastq file that should have had more lines in it. I have the feeling it was a download problem rather than anything else, it's happened in the past that my fastq files have been truncated ...
written 8 days ago by jozs20190
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ABySS error: sequence and quality must be the same length near ...
... Hello! I'm trying to use ABySS 1.9.0 to assemble set of genomic paired end reads. I'm doing this on my university's HPC with parallel processing. In my PBS script, I use: abyss-pe name=abyss_test1 k=63 in='SRR960028_1.fastq SRR960028_2.fastq' v=-v Unfortunately, ABySS terminates quite quickly aft ...
genome assembly error abyss written 9 days ago by jozs20190 • updated 9 days ago by benv330

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