User: Derek Guan

gravatar for Derek Guan
Derek Guan20
Reputation:
20
Status:
New User
Location:
Harbin Institute of Technology, Harbin, China
Last seen:
1 year, 7 months ago
Joined:
2 years, 2 months ago
Email:
d*****@hit.edu.cn

Posts by Derek Guan

<prev • 4 results • page 1 of 1 • next >
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Answer: A: Help with Samtools
... samtools sort doesn't support sam files now, you may use the following command to transfer SAM to BAM: samtools view -b DICDvenus1_SortedReads.sam > DICDvenus1_SortedReads.bam Then you could use DICDvenus1_SortedReads.bam to run "samtools sort" ...
written 2.1 years ago by Derek Guan20
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Comment: C: statistic tools of Kmer including invalid character
... shenwei, Thanks for your help, I will try seqkit. ...
written 2.2 years ago by Derek Guan20
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Comment: C: statistic tools of Kmer including invalid character
... Thanks for your kind reply, It's not a homework, I am gonna statistic Kmers including invalid characters of a large reference library which may contain hundreds of species, and its size could be 200 gigabytes or even larger. The K might be 33 or larger. I have used Jellyfish, however it drops Kmers ...
written 2.2 years ago by Derek Guan20
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statistic tools of Kmer including invalid character
... Is there a tool that could be helpful to statistic kmers including invalid characters? For example, given a sequence "ANTTA", if K=3, then there will be three kmers which is "ANT","NTT" and "TTA". ...
sequence kmer written 2.2 years ago by Derek Guan20 • updated 2.2 years ago by shenwei3564.6k

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