User: stutterdust

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Posts by stutterdust

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Comment: C: Simple amino acid polymorphism count
... Thanks a bunch, works like a charm! ...
written 9 days ago by stutterdust0
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Comment: C: Simple amino acid polymorphism count
... Apologies, seems I attached the wrong file. Here is the [protein alignment][1]. It still contains gaps (-) and stops (*) so I suppose these could be excluded along with X. When running the script I got it to output TXT files but I encountered two issues: 1. the amino acid position numbers are all ...
written 9 days ago by stutterdust0
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Comment: C: Simple amino acid polymorphism count
... Thank you so much for this, this seems like it would do what I need. However rather than using the A, B, C example names I should probably have clarified that each FASTA contains unique sequence names, e.g. the first two are always in the format ZM[10-9999]M ZM[10-9999]F while the third is alway ...
written 9 days ago by stutterdust0
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Simple amino acid polymorphism count
... Hi, I am very new to shell scripting and am hoping someone could help me with the below problem I encountered in my bachelor's project. I have a bunch of .fasta files, each containing three amino acid sequences, A, B and C. I need a script that compares every amino acid position in A or B against ...
alignment unix shell written 10 days ago by stutterdust0 • updated 10 days ago by st.ph.n660

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