User: awilke1972
awilke1972 • 20
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Posts by awilke1972
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... an other option is adding a default:
threads:
type: int?
default: 4
inputBinding:
prefix: --threads
...
written 10 weeks ago by
awilke1972 • 20
0
votes
1
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1
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... How to set exclusive parameters within a worklfow?
Following the example for command line tools the job document looks like:
myDir:
class: Directory
path: /pipeline/CWL/Data/Inputs
myFile:
class: File
path: /pipeline/CWL/Tools/ls.tool.yaml
exclusive_parameter ...
written 6 months ago by
awilke1972 • 20
• updated
6 months ago by
Michael R. Crusoe • 700
0
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1
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1
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... I am trying to run a tool definition on the command line without a job document. It is unclear to me how to pass exclusive parameters,
cwl-runner Tools/ls.tool.yaml --mydir Data/Inputs/ --myfile Tools/ls.tool.yaml --bySize
/usr/local/bin/cwl-runner 1.0.20170329142446
Resolved 'Tool ...
written 6 months ago by
awilke1972 • 20
• updated
6 months ago by
Michael R. Crusoe • 700
3
votes
1
answer
506
views
1
answer
... I am struggling creating a tool definition which has multiple files as InitialWorkDirRequirement.
The problem is that I have two input parameters, one is of type File and the other one of type Directory. I need all files from the Directory to be staged into the working directory. Below is a simple ...
written 7 months ago by
awilke1972 • 20
• updated
7 months ago by
Michael R. Crusoe • 700
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