User: awilke1972

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awilke197210
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Posts by awilke1972

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How to set exclusive parameters within a worklfow
... How to set exclusive parameters within a worklfow? Following the example for command line tools the job document looks like: myDir: class: Directory path: /pipeline/CWL/Data/Inputs myFile: class: File path: /pipeline/CWL/Tools/ls.tool.yaml exclusive_parameter ...
cwl written 7 weeks ago by awilke197210 • updated 6 weeks ago by Michael R. Crusoe500
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How to pass exclusive parameters on the command line (cwl-runner)
... I am trying to run a tool definition on the command line without a job document. It is unclear to me how to pass exclusive parameters, cwl-runner Tools/ls.tool.yaml --mydir Data/Inputs/ --myfile Tools/ls.tool.yaml --bySize /usr/local/bin/cwl-runner 1.0.20170329142446 Resolved 'Tool ...
cwl written 7 weeks ago by awilke197210 • updated 6 weeks ago by Michael R. Crusoe500
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CWL: How to add multiple files from two input parameters of type FILE and DIRECTORY to InitialWorkDirRequirement
... I am struggling creating a tool definition which has multiple files as InitialWorkDirRequirement. The problem is that I have two input parameters, one is of type File and the other one of type Directory. I need all files from the Directory to be staged into the working directory. Below is a simple ...
cwl written 9 weeks ago by awilke197210 • updated 8 weeks ago by Michael R. Crusoe500

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