User: au.rinki.bio

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au.rinki.bio10
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Location:
University of Allahabad, India
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5 days, 11 hours ago
Joined:
2 years, 6 months ago
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Posts by au.rinki.bio

<prev • 47 results • page 1 of 5 • next >
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Comment: C: Is Batch correction required for the same micro array platform?
... In this case how to remove batch effect? ...
written 8 weeks ago by au.rinki.bio10
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Comment: C: Is Batch correction required for the same micro array platform?
... sorry for the very basic question can I consider normal and case sample from different dataset? is it valid for differential expression analysis? ...
written 8 weeks ago by au.rinki.bio10
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Is Batch correction required for the same micro array platform?
... Hii I am handling microarray data and I have two datasets with the same platform (GPL750) one of which contains tumor samples and another one has normal samples. I want to merge these two datasets for differential expression analysis. Is it required batch correction? ...
microarray meta analysis written 8 weeks ago by au.rinki.bio10
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How to prepare "trait.csv" ("trait data") file for creating correlation network by WGCNA
... i have just started co-expression network construction using WGCNA. I had downloaded microarray expression data from GEO database and pre-processed this data. this data consis 10 control sample and 21 cancer samples. my question is that how i can create clinicaltrait.txt file. this data is not ti ...
co-expression network using wgcna written 8 months ago by au.rinki.bio10
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Comment: C: up regulated and down regulated genes in co-expression network
... I am sharing a link for a better explanation, from where I get the code for construction co-expression network http://virtualplant.bio.puc.cl/share/step-by-step/step-by-step.txt ...
written 8 months ago by au.rinki.bio10
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Comment: C: up regulated and down regulated genes in co-expression network
... for the co-expression network construction, we use normal tissue sample and cancer sample at the same time. like we have 10 normal samples and 10 cancer samples. in the input matrix, we have a total of 20 samples in the column and corresponding genes in rows. after normalization of data used above ...
written 8 months ago by au.rinki.bio10
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Comment: C: up regulated and down regulated genes in co-expression network
... This is the which i had used for co-exoression network construction library("psych") data1<-read.table("gse7803_comp.txt") head(data1) Norm.interest.corr1 <- corr.test( t(data1), method="pearson", ci=F) Norm.interest.corr names(Norm.interest.cor ...
written 8 months ago by au.rinki.bio10 • updated 8 months ago by Kevin Blighe50k
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up regulated and down regulated genes in co-expression network
... hi all, I am constructing a co-expression network using gene microarray data via Pearson correlation. I consider a threshold value of absolute 0.80 for the correlation coefficient. I considered three microarray datasets create co-expression network for each dataset separately after that I merged th ...
co-expression written 8 months ago by au.rinki.bio10 • updated 5 months ago by entropy30
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Comment: C: Micoarray meta data analysis
... here, I am asking for same cancer (cervical) but datasets are different. ...
written 10 months ago by au.rinki.bio10
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Micoarray meta data analysis
... hello, I am working on a meta-analysis of the microarray data for the different type of cancer and trying to find out common genes for these cancers. For the same type of cancer (high grade) from different data sets, we get a different number of genes, as we increase the number of data sets, the com ...
metadata analysis and cancer written 10 months ago by au.rinki.bio10 • updated 10 months ago by guangyan.zh00

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Popular Question 5 weeks ago, created a question with more than 1,000 views. For ngs vs microarray
Supporter 8 weeks ago, voted at least 25 times.
Popular Question 8 months ago, created a question with more than 1,000 views. For ngs vs microarray

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