User: Begali

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Begali0
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Posts by Begali

<prev • 7 results • page 1 of 1 • next >
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CNV detection in mRNA , SNP array using R
... Dear all; kindly I would like to receive about any hints for R pacakge or tutorial in order to be able to detect germline copy number variation in mRNA data as well as in SNP array... Moreover, I have only one type of sample, file for each patient related to healthy tissue in different format ( f ...
R written 6 days ago by Begali0
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Comment: C: lncRNA Region analysis
... @ATpoint Thanks for your link I have mRNA-seq as well as DNA-seq and my task is to identify analysis lncRNA such as 1- lncRNA expression in multiple samples 2- annotated genes with in lncRNA seq or near of exons and so on 3- SNPs in lncRNA Another Q could lncRNA analyzed using mRNA or DNA-seq an ...
written 6 weeks ago by Begali0
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lncRNA Region analysis
... Dear all I would like to analyze lncRNA for multiples samples, Kindly could you please share me best tutorial and workflow in order to perform as I am new I do not know which one will be the best and available tutorial to use its workflow with best regards ...
tools lncrna written 6 weeks ago by Begali0 • updated 6 weeks ago by WouterDeCoster40k
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Answer: A: SNP calling with SAMtools on multiple samples
... Hi @Pierre Lindenbaum how if I merged all bam files in one single bam that containll samples with their RG tag, then call varaints with samtools and bcftools Thanks for your attention ...
written 4 months ago by Begali0
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Error during mapping using bwa mem
... Hi , any suggestion to fix this error during using bwa mem by this command: bwa mem hg38.fasta Z#1.fq > Z#1.sam Got error [bwt_restore_bwt] Failed to allocate 3217346964 bytes at bwt.c line 452: Cannot allocate memory how to fix it, I have already tried to update bwa but still same e ...
software error alignment written 13 months ago by Begali0 • updated 13 months ago by genomax70k
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Q for how to extrcat unique information of vcf.file
... hi I am new for tools such as samtools, bcftools, BWA and GATK and I am working on RADSeq I reach for point call variants which include ( INDEL and SNP) now time to filter them I could not do that by GATK with VQSR which reuired resources bundle folder which are not available for my organisms pla ...
alignment next-gen sequence snp written 2.2 years ago by Begali0
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Answer: A: Extracting Specific Reads From Vcf File
... hi I am new for tools such as samtools, bcftools, BWA and GATK and I am working on RADSeq I reach for point call variants which include ( INDEL and SNP) now time to filter them I could not do that by GATK with VQSR which reuired resources bundle folder which are not available for my organisms pla ...
written 2.2 years ago by Begali0

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