User: yzfmonster

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yzfmonster20
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Posts by yzfmonster

<prev • 7 results • page 1 of 1 • next >
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Comment: C: How to analyze count matrix from Synapse.org
... Hi Thank you for reply. I downloaded by first installing their interface package called synapseClient. and logged in by synapseLogin. library(synapseClient) synapseLogin('login', 'pw', rememberMe = T) and I use the code below to get the file "syn5053499" syn5053499 <- synGet(id='s ...
written 23 months ago by yzfmonster20
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How to analyze count matrix from Synapse.org
... Hi all, I downloaded this file from Synapse.org, which is a count matrix for RNAseq data. https://www.synapse.org/#!Synapse:syn5053498 I downloaded it to R, and this file is Formal Class File. I do not know how to proceed with this file to analyze the data. Any help would be appreciated! ...
synapse data analysis rna-seq written 23 months ago by yzfmonster20
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Comment: C: Updated R version to 3.3.3 and now I can not download from source("http://biocon
... I still have to remove s from https. Thank you ...
written 2.6 years ago by yzfmonster20
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Comment: C: Updated R version to 3.3.3 and now I can not download from source("http://biocon
... Thank you for fixing my messages. Could you please explain what/where 101010 button is? Thank you again. ...
written 2.6 years ago by yzfmonster20
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Comment: C: Updated R version to 3.3.3 and now I can not download from source("http://biocon
... Problem solved by install.packages("BiocInstaller",repos="http://bioconductor.org/packages/3.4/bioc") ...
written 2.6 years ago by yzfmonster20 • updated 2.6 years ago by WouterDeCoster42k
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Comment: C: Updated R version to 3.3.3 and now I can not download from source("http://biocon
... Thanks for reply. I get many warnings and error message. 'biocLite.R' failed to install 'BiocInstaller', use 'install.packages("BiocInstaller", repos="https://bioconductor.org/packages/3.4/bioc")' or 'install.packages("BiocInstaller", repos="http://bioconductor.org/packages/3.4/bioc")' ...
written 2.6 years ago by yzfmonster20
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Updated R version to 3.3.3 and now I can not download from source("http://bioconductor.org/biocLite.R")
... Dear experts! I had no problem downloading the following packages when I had version 3.0.7 last weekend, but I upgraded to 3.3.3 now. source("http://bioconductor.org/biocLite.R") biocLite("DESeq2") source("http://bioconductor.org/biocLite.R") biocLite("edgeR") source("http://bi ...
rna-seq written 2.6 years ago by yzfmonster20 • updated 2.6 years ago by WouterDeCoster42k

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