User: amandinette

gravatar for amandinette
amandinette20
Reputation:
20
Status:
New User
Location:
France
Last seen:
2 years, 1 month ago
Joined:
2 years, 3 months ago
Email:
a****************@univ-lyon1.fr

Posts by amandinette

<prev • 5 results • page 1 of 1 • next >
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"Core Dumped" when using GEMMA for GWAS
... Dear all, I am following this tutorial about bacterial GWAS using GEMMA and Bugwas : https://github.com/janepipistrelle/bacterial_GWAS_tutorial/blob/master/tutorial.rmd When I try correct for population structure, I obtain a segmentation fault. Rscript bacterialGWAS/kmerGWAS/kmerLMM.R -chisqS ...
gemma bugwas gwas written 2.2 years ago by amandinette20 • updated 6 months ago by morteza.mahmoudisaber70
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Comment: C: How to find orthologs in both complete and fragmented genomes using OMA Standalo
... done ! (sorry, I am a newbie on this forum :-) ) ...
written 2.3 years ago by amandinette20
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OMA warning about mapping to a clade
... Dear OMA users and developers, When I run OMA on my personal data, I get this warning for each genome included in the analysis: "WARNING: Unable to map xxxxx to a clade. Will not propage function." Can someone tell me what it means ? Thank you. ...
oma orthology written 2.3 years ago by amandinette20 • updated 2.3 years ago by adrian.altenhoff620
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Comment: C: How to find orthologs in both complete and fragmented genomes using OMA Standalo
... Thank you for these explanations ! ...
written 2.3 years ago by amandinette20
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How to find orthologs in both complete and fragmented genomes using OMA Standalone ?
... Hi, I would like to identify orthologs among about 40 bacterial genomes and then construct an orthologous matrix. Some of the genomes I am working on have been retrieved from the NCBI website and are complete. Others are custom genomes with an assembly level being "scaffolds". I tried to use the " ...
orthologs oma esprit written 2.3 years ago by amandinette20 • updated 2.3 years ago by Christophe Dessimoz540

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