User: fatimarasool135

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Posts by fatimarasool135

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Comment: C: how to fetch the specific sequence of gene from rna seq data
... i have to generate it from tool or download it from ensembl ? ...
written 9 days ago by fatimarasool1350
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poly ploid consensus seq generation
... Hi everyone, I want to generate polyploid consensus sequence for wheat from BAM file for purposes of retrieving the specific sequence of one transcript/ gene.i want to fetch the sequence of transcript/gene abc from rna seq of wheat.what should i do for that? my command line is: samtools mpileup ...
genome assembly rna-seq snp written 9 days ago by fatimarasool1350
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Comment: C: mapping of rna seq read to reference seq
... i am working on wheat rna seq . i want to get specific gene / transcript from it.kindly tell me steps for this analysis ...
written 9 days ago by fatimarasool1350
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Comment: C: how to fetch the specific sequence of gene from rna seq data
... from where i can got GTF file ? ...
written 9 days ago by fatimarasool1350
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mapping of rna seq read to reference seq
... Hi. what will be the reference sequence used for mapping of rna seq read to reference ? shuold it be cDNA or genomic sequence? ...
rna-seq written 13 days ago by fatimarasool1350 • updated 13 days ago by WouterDeCoster35k
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Comment: C: how to fetch the specific sequence of gene from rna seq data
... Hi. what will the reference sequence used for mapping of rna seq read ? is it shuold be cDNA or genomic sequence? ...
written 13 days ago by fatimarasool1350
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Comment: C: how to fetch the specific sequence of gene from rna seq data
... I simply follow these step to get gene sequence.... i want to know how i fetch the desired seq of gene from rna seq of mine sample ...
written 22 days ago by fatimarasool1350
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Comment: C: how to fetch the specific sequence of gene from rna seq data
... Thank you please tell me steps to get the specific sequence of gene from rna seq data .like there is a gene abc in wheat i want to retrieve this abc from mine sample of rna seq . ...
written 22 days ago by fatimarasool1350
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how to fetch the specific sequence of gene from rna seq data
... can we retrived the spesific seqence of the gene from rna seq data of one species.? For this pupose i perform the following steps but the resulyt out put file contain long string of nnnn with nuclotide sequnce Indexing by bowtie2 bowtie2-build --large-index -f wheat.fa wheat mapping by to ...
gene alignment rna-seq written 22 days ago by fatimarasool1350 • updated 22 days ago by finswimmer8.0k
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Comment: C: mutation vs snp
... i have excel file...in which i have only chromosome number,position of snp ,etc...this excel file not contain any id or genes in which thess snps are known. i want to know the corresponding genes and proteins of snps ...
written 6 weeks ago by fatimarasool1350

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