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21
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12
replies
17k
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How to run the Deseq2 tool without replicates.
RNA-Seq rna-seq Deseq2 Bioconductor R
updated 3.4 years ago by • 0 • written 4.6 years ago by ▴ 90
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0
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689
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Comment: C: codon changes finding in gene
3.8 years ago by fatimarasool135 ▴ 90
0
votes
4
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689
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codon changes finding in gene
snp R software error gene RNA-Seq
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 90
0
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1
reply
689
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Comment: C: codon changes finding in gene
3.8 years ago by fatimarasool135 ▴ 90
1
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0
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491
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RNA Editing sites that leads to codons changes cause the change in amino acid
rna-seq
updated 4.2 years ago by 82k • written 4.2 years ago by ▴ 90
0
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4
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1.2k
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error in trinity
RNA-Seq Assembly assembly alignment
4.5 years ago by fatimarasool135 ▴ 90
0
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0
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1.2k
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Comment: C: error in trinity
updated 4.5 years ago by 5.8k • written 4.5 years ago by ▴ 90
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0
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1.2k
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Comment: C: error in trinty
4.5 years ago by fatimarasool135 ▴ 90
0
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0
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3.2k
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Comment: C: error in installation of TRinity by conda
4.5 years ago by fatimarasool135 ▴ 90
1
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2
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3.2k
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error in installation of TRinity by conda
RNA-Seq software error assembly
4.5 years ago by fatimarasool135 ▴ 90
0
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1
reply
2.2k
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Comment: C: gene sequence fetching from bam or fastq file of rna seq data
4.6 years ago by fatimarasool135 ▴ 90
0
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1
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3.7k
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Comment: C: edgeR dispersion value (common BCV (square- root-dispersion)) when no replicates
4.6 years ago by fatimarasool135 ▴ 90
1
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4
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3.7k
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edgeR dispersion value (common BCV (square- root-dispersion)) when no replicates in dataset
R RNA-Seq next-gen software error genome
4.6 years ago by fatimarasool135 ▴ 90
0
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1
reply
3.3k
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Comment: A: biomaRt: Cannot access the zebra fish dataset
4.6 years ago by fatimarasool135 ▴ 90
1
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0
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583
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wheat_gene_ensembl not available on biomaRt
RNA-Seq genome assembly gene
4.6 years ago by fatimarasool135 ▴ 90
0
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1
reply
17k
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Comment: A: How to run the Deseq2 tool wothout replicates.
4.6 years ago by fatimarasool135 ▴ 90
0
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1
reply
17k
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Comment: C: How to run the Deseq2 tool wothout replicates.
4.6 years ago by fatimarasool135 ▴ 90
0
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0
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1.8k
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Comment: C: how to set Deseq factor
4.6 years ago by fatimarasool135 ▴ 90
0
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1
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1.8k
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Comment: C: how to set Deseq factor
4.6 years ago by fatimarasool135 ▴ 90
0
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0
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1.8k
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Comment: A: how to set Deseq factor
4.6 years ago by fatimarasool135 ▴ 90
1
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7
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1.8k
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how to set Deseq factor
R RNA-Seq assembly software error next-gen
4.6 years ago by fatimarasool135 ▴ 90
0
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1
reply
1.8k
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Comment: C: how to set Deseq factor
4.6 years ago by fatimarasool135 ▴ 90
0
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1
reply
2.3k
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Comment: C: count matrices for genes and transcripts for all samples
4.6 years ago by fatimarasool135 ▴ 90
0
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5
replies
2.3k
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count matrices for genes and transcripts for all samples
RNA-Seq software error alignment Assembly
updated 4.6 years ago by ▴ 680 • written 4.6 years ago by ▴ 90
0
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0
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2.3k
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Comment: C: count matrices for genes and transcripts for all samples
4.6 years ago by fatimarasool135 ▴ 90
2
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1
reply
1.5k
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htseq-count error while bam file was sorted by name
RNA-Seq assembly alignment software error R
4.6 years ago by fatimarasool135 ▴ 90
0
votes
0
replies
2.2k
views
Comment: C: gene sequence fetching from bam or fastq file of rna seq data
4.6 years ago by fatimarasool135 ▴ 90
0
votes
2
replies
288k
views
Comment: A: Gene Id Conversion Tool
updated 4.7 years ago by 43k • written 5.0 years ago by ▴ 90
0
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1
reply
2.2k
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Comment: C: gene sequence fetching from bam or fastq file of rna seq data
4.7 years ago by fatimarasool135 ▴ 90
0
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1
reply
2.2k
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Comment: C: gene sequence fetching from bam or fastq file of rna seq data
4.7 years ago by fatimarasool135 ▴ 90
0
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0
replies
665
views
graphs plotong by ballgown
RNA-Seq R software error
4.7 years ago by fatimarasool135 ▴ 90
0
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1
reply
2.2k
views
Comment: C: gene sequence fetching from bam or fastq file of rna seq data
4.7 years ago by fatimarasool135 ▴ 90
0
votes
0
replies
2.2k
views
Comment: C: gene sequence fetching from bam or fastq file of rna seq data
4.7 years ago by fatimarasool135 ▴ 90
0
votes
1
reply
2.2k
views
Comment: C: gene sequence fetching from bam or fastq file of rna seq data
4.7 years ago by fatimarasool135 ▴ 90
0
votes
1
reply
942
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Comment: C: extraction significant genes
4.7 years ago by fatimarasool135 ▴ 90
0
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1
reply
1.4k
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Comment: C: graphs plotong by R
4.8 years ago by fatimarasool135 ▴ 90
0
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1
reply
942
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Comment: C: extraction significant genes
4.8 years ago by fatimarasool135 ▴ 90
0
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0
replies
1.4k
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Comment: C: graphs plotong by R
4.8 years ago by fatimarasool135 ▴ 90
4
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6
replies
942
views
extraction significant genes
R RNA-Seq
updated 2.5 years ago by 43k • written 4.8 years ago by ▴ 90
0
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1
reply
1.4k
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Comment: C: graphs plotong by R
4.8 years ago by fatimarasool135 ▴ 90
7
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1
reply
721
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Graph for PCs, can't apply colours to the points.
R RNA-Seq
updated 4.8 years ago by 11k • written 4.8 years ago by ▴ 90
0
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1
reply
1.4k
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Comment: C: graphs plotong by R
4.8 years ago by fatimarasool135 ▴ 90
0
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0
replies
1.4k
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Comment: C: graphs plotong by R
4.8 years ago by fatimarasool135 ▴ 90
2
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9
replies
1.4k
views
graphs plotong by R
R rna-seq
updated 4.8 years ago by 35k • written 4.8 years ago by ▴ 90
0
votes
0
replies
991
views
Comment: C: separation of number of DE genes for one sample from output file obtain from ba
4.9 years ago by fatimarasool135 ▴ 90
3
votes
3
replies
991
views
separation of number of DE genes for one sample from output file obtain from ballgown.
RNA-Seq rna-seq Assembly gene software error
updated 4.9 years ago by 82k • written 4.9 years ago by ▴ 90
0
votes
0
replies
3.0k
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Comment: C: how to interpret hisat2 result
5.0 years ago by fatimarasool135 ▴ 90
0
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1
reply
3.0k
views
Comment: C: how to interpret hisat2 result
5.0 years ago by fatimarasool135 ▴ 90
1
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7
replies
3.0k
views
how to interpret hisat2 result
RNA-Seq alignment Assembly
5.0 years ago by fatimarasool135 ▴ 90
0
votes
1
reply
3.0k
views
Comment: A: how to interpret hisat2 result
5.0 years ago by fatimarasool135 ▴ 90
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