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21
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12
replies
17k
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How to run the Deseq2 tool without replicates.
RNA-Seq rna-seq Deseq2 Bioconductor R
updated 3.4 years ago by • 0 • written 4.6 years ago by ▴ 90
0
votes
4
replies
686
views
codon changes finding in gene
snp R software error gene RNA-Seq
updated 3.8 years ago by 141k • written 3.8 years ago by ▴ 90
1
vote
0
replies
490
views
RNA Editing sites that leads to codons changes cause the change in amino acid
rna-seq
updated 4.2 years ago by 82k • written 4.2 years ago by ▴ 90
0
votes
4
replies
1.2k
views
error in trinity
RNA-Seq Assembly assembly alignment
4.5 years ago by fatimarasool135 ▴ 90
1
vote
2
replies
3.2k
views
error in installation of TRinity by conda
RNA-Seq software error assembly
4.5 years ago by fatimarasool135 ▴ 90
1
vote
4
replies
3.7k
views
edgeR dispersion value (common BCV (square- root-dispersion)) when no replicates in dataset
R RNA-Seq next-gen software error genome
4.6 years ago by fatimarasool135 ▴ 90
1
vote
0
replies
582
views
wheat_gene_ensembl not available on biomaRt
RNA-Seq genome assembly gene
4.6 years ago by fatimarasool135 ▴ 90
1
vote
7
replies
1.7k
views
how to set Deseq factor
R RNA-Seq assembly software error next-gen
4.6 years ago by fatimarasool135 ▴ 90
0
votes
5
replies
2.3k
views
count matrices for genes and transcripts for all samples
RNA-Seq software error alignment Assembly
updated 4.6 years ago by ▴ 680 • written 4.6 years ago by ▴ 90
2
votes
1
reply
1.5k
views
htseq-count error while bam file was sorted by name
RNA-Seq assembly alignment software error R
4.6 years ago by fatimarasool135 ▴ 90
0
votes
0
replies
663
views
graphs plotong by ballgown
RNA-Seq R software error
4.7 years ago by fatimarasool135 ▴ 90
4
votes
6
replies
935
views
extraction significant genes
R RNA-Seq
updated 2.5 years ago by 43k • written 4.8 years ago by ▴ 90
7
votes
1
reply
719
views
Graph for PCs, can't apply colours to the points.
R RNA-Seq
updated 4.8 years ago by 11k • written 4.8 years ago by ▴ 90
2
votes
9
replies
1.4k
views
graphs plotong by R
R rna-seq
updated 4.8 years ago by 35k • written 4.8 years ago by ▴ 90
3
votes
3
replies
989
views
separation of number of DE genes for one sample from output file obtain from ballgown.
RNA-Seq rna-seq Assembly gene software error
updated 4.9 years ago by 82k • written 4.9 years ago by ▴ 90
1
vote
7
replies
3.0k
views
how to interpret hisat2 result
RNA-Seq alignment Assembly
5.0 years ago by fatimarasool135 ▴ 90
9
votes
3
replies
12k
views
The following object is masked from package:base
R RNA-Seq software error
updated 5.0 years ago by 11k • written 5.0 years ago by ▴ 90
0
votes
2
replies
1.2k
views
ballgown stattest function error
R RNA-Seq
updated 5.0 years ago by 43k • written 5.0 years ago by ▴ 90
0
votes
3
replies
1.8k
views
conversion of gene ids into ensembl id
mapping annotation
updated 13 months ago by 43k • written 5.0 years ago by ▴ 90
0
votes
3
replies
984
views
which file used for GO
RNA-Seq rna-seq R
5.0 years ago by fatimarasool135 ▴ 90
0
votes
0
replies
988
views
how can I do Gene ontology ,Singular Enrichment Analysis KEGG analysis
RNA-Seq next-gen R rna-seq
5.0 years ago by fatimarasool135 ▴ 90
3
votes
6
replies
3.3k
views
Load phenotype data for samples
RNA-Seq R
updated 5.1 years ago by 11k • written 5.1 years ago by ▴ 90
1
vote
17
replies
2.2k
views
gene sequence fetching from bam or fastq file of rna seq data
rna-seq gene genome alignment sequence
5.1 years ago by fatimarasool135 ▴ 90
0
votes
18
replies
3.8k
views
transcripts assemble by StringTie
RNA-Seq assembly rna-seq next-gen
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by ▴ 90
0
votes
0
replies
813
views
poly ploid consensus seq generation
rna-seq SNP assembly genome RNA-Seq
5.4 years ago by fatimarasool135 ▴ 90
4
votes
3
replies
1.9k
views
mapping of rna seq read to reference seq
rna-seq
updated 5.4 years ago by 47k • written 5.4 years ago by ▴ 90
2
votes
9
replies
1.5k
views
how to fetch the specific sequence of gene from rna seq data
RNA-Seq gene alignment
updated 5.4 years ago by 16k • written 5.4 years ago by ▴ 90
1
vote
5
replies
1.0k
views
mutation vs snp
SNP RNA-Seq
updated 5.5 years ago by 16k • written 5.5 years ago by ▴ 90
0
votes
0
replies
774
views
calculation of heterozygosity and homozygosity of wheat
RNA-Seq SNP genome gene
updated 5.6 years ago by 87k • written 5.6 years ago by ▴ 90
4
votes
11
replies
1.2k
views
sequence alignment of protein sequence
sequence alignment
5.6 years ago by fatimarasool135 ▴ 90
2
votes
10
replies
1.2k
views
for extension of gene family
genome alignment gene sequence
5.7 years ago by fatimarasool135 ▴ 90
5
votes
7
replies
1.6k
views
assembly of wheat genome
rna-seq Assembly sequence sequencing
updated 6.2 years ago by 20 • written 6.8 years ago by ▴ 90
2
votes
1
reply
1.4k
views
RNA seq of wheat genome
RNA-Seq next-gen rna-seq
updated 6.4 years ago by 141k • written 6.4 years ago by ▴ 90
5
votes
10
replies
6.0k
views
gatk tool installation problem
R software error snp
updated 6.6 years ago by ▴ 20 • written 6.8 years ago by ▴ 90
2
votes
3
replies
1.6k
views
snp detection for RNA SEQ
RNA-Seq
updated 6.8 years ago by ★ 1.2k • written 6.8 years ago by ▴ 90
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