User: fatimarasool135

Reputation:
60
Status:
Trusted
Location:
Last seen:
1 month, 2 weeks ago
Joined:
3 years, 4 months ago
Email:
f**************@gmail.com

Posts by fatimarasool135

<prev • 110 results • page 2 of 11 • next >
0
votes
0
answers
695
views
0
answers
Comment: C: edgeR dispersion value (common BCV (square- root-dispersion)) when no replicates
... Hi ATpoint, I have read vst in the manual of DEseq2. but i could not understand itkindly write command I have compared the samples to each other by using the Deseq2 tool and have list of genes with parameters generated by deseq2 tool. Now i have no chance to take biological replicates. You have tol ...
written 11 months ago by fatimarasool13560
1
vote
0
answers
695
views
0
answers
edgeR dispersion value (common BCV (square- root-dispersion)) when no replicates in dataset
... I am performing several analysis of differential expression (using edgeR). Reading edgeR manual I am not sure about BCV value that I should use. I am comparing libraries of the same species (non model species) and i have no biological replicates. In the manual you say that "Typical values for the ...
software error R next-gen rna-seq genome written 11 months ago by fatimarasool13560
0
votes
2
answers
1.2k
views
2
answers
Comment: A: biomaRt: Cannot access the zebra fish dataset
... Hi Mike Smith, I am using the biomart package. and i have not seen dataset of wheat. Can you please tell me how to acess the wheat dataset ? ...
written 11 months ago by fatimarasool13560
1
vote
0
answers
163
views
0
answers
wheat_gene_ensembl not available on biomaRt
... Hi , I have the STRG gene ids.I want to get the gene names of these genes or ensembl gene ids of wheat . How can I get It? I have read the Biomart package but fond nothing. ...
genome assembly rna-seq gene written 11 months ago by fatimarasool13560
0
votes
2
answers
2.2k
views
2
answers
Comment: A: How to run the Deseq2 tool wothout replicates.
... Yes i have no replicates in any group and i nothing found answer to my question in manual of Deseq ...
written 11 months ago by fatimarasool13560
0
votes
2
answers
2.2k
views
2
answers
Comment: C: How to run the Deseq2 tool wothout replicates.
... Yes i have no replicates in any group and i nothing found answer to my question in manual of Deseq ...
written 11 months ago by fatimarasool13560
16
votes
2
answers
2.2k
views
5 follow
2
answers
How to run the Deseq2 tool without replicates.
... Hi, I am doing differential gene expression by Deseq2 tool. I have no replicates and I am doing multi group comparison between samples. Can anyone tell me how to run the Deseq2 tool without replicates? ...
R bioconductor deseq2 rna-seq written 11 months ago by fatimarasool13560 • updated 11 months ago by waqaskhokhar99980
0
votes
1
answer
326
views
1
answers
Comment: C: how to set Deseq factor
... I am trying to create the coldata frame for DESeqDataSetFromMatrix design to instantiate the DESeqDataSet, by using the following command (coldata <- data.frame(row.names=colnames(countdata), condition))` but i got this error >> coldata <- data.frame(row.names=colnames(countData) ...
written 11 months ago by fatimarasool13560
0
votes
1
answer
326
views
1
answers
Comment: C: how to set Deseq factor
... Can you please help me more... can you set the script according to my dataset .? ...
written 11 months ago by fatimarasool13560
0
votes
1
answer
326
views
1
answers
Comment: A: how to set Deseq factor
... Actually i want this comparison `> combn(6,2) [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [,15] [1,] 1 1 1 1 1 2 2 2 2 3 3 3 4 4 5 [2,] 2 3 4 5 6 3 4 5 6 4 5 6 5 ...
written 11 months ago by fatimarasool13560

Latest awards to fatimarasool135

Popular Question 4 months ago, created a question with more than 1,000 views. For transcripts assemble by StringTie
Popular Question 4 months ago, created a question with more than 1,000 views. For transcripts assemble by StringTie
Popular Question 6 months ago, created a question with more than 1,000 views. For gatk tool installation problem
Centurion 11 months ago, created 100 posts.
Popular Question 2.2 years ago, created a question with more than 1,000 views. For gatk tool installation problem

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 627 users visited in the last hour