User: fatimarasool135

Reputation:
40
Status:
New User
Location:
Last seen:
3 weeks, 2 days ago
Joined:
2 years, 6 months ago
Email:
f**************@gmail.com

Posts by fatimarasool135

<prev • 102 results • page 3 of 11 • next >
0
votes
0
answers
73
views
0
answers
graphs plotong by ballgown
... I want to plot several samples at once I have run this command plotTranscripts('TraesCS1B02G048400', bg_chrX, samples=c('G1', 'G2', 'G3', 'G4'),meas='FPKM', colorby='transcript') The error got is > Error in seq.default(min(gtrans$start), max(gtrans$end), by = 1) : > 'from' must be a f ...
software error R rna-seq written 10 weeks ago by fatimarasool13540
0
votes
1
answer
356
views
1
answers
Comment: C: gene sequence fetching from bam or fastq file of rna seq data
... Hi Buffo, I have run the stringtie tool and five files have been generated. > 1 GTF file containing the assembled transcripts > 2 Gene abundances in tab-delimited format > 3 Fully covered transcripts that match the reference annotation, in GTF format > 4 Files required ...
written 11 weeks ago by fatimarasool13540
0
votes
1
answer
356
views
1
answers
Comment: C: gene sequence fetching from bam or fastq file of rna seq data
... Hi Buffo, I have run the stringtie tool and five files have been generated. 1 GTF file containing the assembled transcripts 2 Gene abundances in tab-delimited format 3 Fully covered transcripts that match the reference annotation, in GTF format 4 Files required as input to Bal ...
written 11 weeks ago by fatimarasool13540
0
votes
1
answer
356
views
1
answers
Comment: C: gene sequence fetching from bam or fastq file of rna seq data
... Hi buffo, I have run the strigtie and got the assembled transcripts.next i want to fetch the transcripts sequences from all six sample .how can I do? ...
written 11 weeks ago by fatimarasool13540
0
votes
1
answer
166
views
1
answers
Comment: C: extraction significant genes
... I have done. now my next question is that Can i change the threshhold value of fc and q val? Can I choose the q value <0.3 ?because the criteria which i have mentioned above for fc and qval gave too much low numbers of genes. ...
written 11 weeks ago by fatimarasool13540
0
votes
0
answers
203
views
0
answers
Comment: C: graphs plotong by R
... Hi Fabio, please reply me . awaiting. ...
written 3 months ago by fatimarasool13540
0
votes
1
answer
166
views
1
answers
Comment: C: extraction significant genes
... yes i have RNA seq data. and in file p value q value fc value and fpkm value column present. here is some lines shown. > "GeneName","feature","id","fc","pval","qval","Drought_sensitive_G1","Drought_sensitive_G2","Drought_tolerant_G3","Drought_tolerant_G4","Drought_tolerant_G5","Drought_tolerant_ ...
written 3 months ago by fatimarasool13540
0
votes
0
answers
203
views
0
answers
Comment: C: graphs plotong by R
... > head subsetq.csv "GeneName","feature","id","fc","pval","qval","Drought_sensitive_G1","Drought_sensitive_G2","Drought_tolerant_G3","Drought_tolerant_G4","Drought_tolerant_G5","Drought_tolerant_G6" ".","gene","MSTRG.10469",0.329488903619917,0.00142832748896338,0.259910259261526,2.5003,2.232766, ...
written 3 months ago by fatimarasool13540
4
votes
1
answer
166
views
1
answer
extraction significant genes
... Hi I want to extract the list of genes (significant results) having FDR <0.05 and FC > 10.0 or FC<0.10 from file which have all expressed genes. how can i do it ? ...
R rna-seq written 3 months ago by fatimarasool13540 • updated 3 months ago by Benn7.8k
0
votes
0
answers
203
views
0
answers
Comment: C: graphs plotong by R
... Yes got it. Thanks . Now I want to extract the list of genes (significant results) having FDR <0.05 and FC > 10.0 or FC<0.10 from file which have all expressed genes. how can i do it ? ...
written 3 months ago by fatimarasool13540

Latest awards to fatimarasool135

Centurion 5 weeks ago, created 100 posts.
Popular Question 16 months ago, created a question with more than 1,000 views. For gatk tool installation problem

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1558 users visited in the last hour